MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.8 nTPM
HPA Brain:117.9 nTPM
GTEx:29.8 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:57.8 nTPM
Mouse:74.5 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.7
1827 Male, age 72, unknown 103.1
2219 Male, age 76, both hemispheres 102.4
2586 Male, age 75, left hemisphere 102.0
1833 Male, age 53, unknown 98.6
2666 Male, age 74, left hemisphere 96.6
2828 Female, age 72, unknown 94.2
1870 Female, age 42, unknown 93.6
2411 Female, age 72, unknown 91.9
1830 Male, age 51, unknown 90.0
2019 Male, age 18, unknown 74.9
Dorsal raphe nucleus
nTPM: 106.9
2047 Male, age 72, unknown 120.7
1828 Male, age 53, unknown 106.8
2298 Female, age 72, unknown 106.2
2016 Female, age 72, unknown 101.2
2750 Male, age 76, both hemispheres 99.7
Inferior colliculus
nTPM: 98.5
2097 Female, age 72, unknown 100.9
2849 Male, age 72, unknown 99.4
1890 Male, age 53, unknown 97.0
1848 Female, age 42, unknown 96.7
Median raphe nucleus
nTPM: 117.9
2220 Male, age 76, midline 117.9
Periaquaductal grey, anterior
nTPM: 110.2
1947 Male, age 18, unknown 127.0
2502 Female, age 75, unknown 103.1
1795 Male, age 51, unknown 100.6
Periaquaductal grey, dorsal
nTPM: 107.7
1840 Male, age 53, unknown 117.1
2850 Male, age 76, both hemispheres 113.1
1831 Male, age 72, unknown 104.1
2464 Female, age 72, unknown 96.2
Periaquaductal grey, lateral
nTPM: 100.9
2140 Male, age 76, both hemispheres 114.3
2053 Male, age 18, unknown 102.0
2272 Male, age 74, both hemispheres 86.4
Pretectal area
nTPM: 96.9
2825 Male, age 18, unknown 112.6
2224 Female, age 72, unknown 105.7
2667 Female, age 75, unknown 104.3
1816 Male, age 51, unknown 101.3
2407 Male, age 75, both hemispheres 99.4
1944 Female, age 72, unknown 98.6
2316 Male, age 76, right hemisphere 97.3
2273 Male, age 74, both hemispheres 93.1
1815 Male, age 53, unknown 86.4
2007 Male, age 72, unknown 84.6
1817 Female, age 42, unknown 82.1
Red nucleus
nTPM: 86.2
2584 Male, age 75, left hemisphere 102.3
2725 Female, age 75, unknown 97.6
2588 Male, age 74, left hemisphere 91.7
2823 Male, age 76, right hemisphere 89.6
2503 Female, age 72, unknown 87.7
1954 Female, age 42, unknown 87.3
1904 Male, age 53, unknown 82.9
2227 Male, age 72, unknown 82.0
1821 Female, age 72, unknown 81.2
1865 Male, age 51, unknown 79.9
2769 Male, age 72, unknown 79.8
2785 Male, age 18, unknown 72.1
Substantia nigra
nTPM: 104.5
2241 Male, age 72, unknown 127.5
1916 Female, age 42, unknown 120.7
1851 Male, age 51, unknown 112.7
2409 Female, age 72, unknown 112.0
2699 Male, age 18, unknown 101.7
1941 Male, age 53, unknown 98.7
2665 Male, age 74, both hemispheres 96.2
2583 Male, age 75, right hemisphere 95.9
1889 Female, age 72, unknown 89.9
2590 Female, age 75, unknown 89.7
Superior colliculus
nTPM: 93.1
2664 Male, age 75, both hemispheres 109.5
2261 Male, age 18, unknown 103.1
1796 Male, age 53, unknown 96.2
2087 Female, age 72, unknown 96.2
2668 Female, age 75, unknown 92.8
1895 Male, age 76, right hemisphere 92.3
1839 Male, age 51, unknown 92.0
2587 Male, age 74, left hemisphere 87.3
1913 Female, age 42, unknown 81.8
1995 Male, age 72, unknown 79.9
Ventral tegmental area
nTPM: 104.1
1942 Male, age 51, unknown 112.6
2021 Male, age 53, unknown 108.2
1915 Female, age 42, unknown 106.1
2218 Male, age 76, both hemispheres 105.9
2410 Female, age 72, unknown 97.7
2223 Female, age 72, unknown 93.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.8
Samples: 139

Max nTPM: 59.3
Min nTPM: 12.2
Std nTPM: 8.7
Median nTPM: 27.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 59.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 52.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 52.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 49.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 48.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 46.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 46.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 46.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 45.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 44.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.5
FF:10158-103A5 76 years, female 32.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.8
Samples: 4

Max nTPM: 71.6
Min nTPM: 47.8
Sample A Female 71.6
Sample B Female 52.2
Sample C Male 59.7
Sample D Male 47.8
Midbrain
nTPM: 57.1
Samples: 4

Max nTPM: 68.7
Min nTPM: 47.0
Sample A Female 68.7
Sample B Female 65.3
Sample C Male 47.3
Sample D Male 47.0
Periaqueductal gray
nTPM: 54.1
Samples: 3

Max nTPM: 57.7
Min nTPM: 50.3
Sample B Female 54.3
Sample C Male 57.7
Sample D Male 50.3
Superior colliculi
nTPM: 48.8
Samples: 4

Max nTPM: 59.6
Min nTPM: 42.9
Sample A Female 59.6
Sample B Female 42.9
Sample C Male 43.8
Sample D Male 48.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 74.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.5
Samples: 4

Max nTPM: 75.6
Min nTPM: 72.7
Sample A Male 75.4
Sample B Male 74.2
Sample C Female 72.7
Sample D Female 75.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
513474 Antisense, RP_040810_01_G04, Mouse strain C57BL/6J (56 days, male) 2.7

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