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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

80.892
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:102.1 nTPM
FANTOM5:46.7 Scaled Tags Per Million
Pig:53.2 nTPM
Allen mouse:7.4 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA037991
Medulla oblongata mean intensity 80.892
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 61.805
Raphe magnus nucleus 20.549
Cochlear nucleus 23.540
Lateral paragigantocellular nucleus 15.238
Raphe pallidus nucleus 80.892
Facial nucleus 13.871
Hypoglossal nucleus 21.291
Ambiguus nucleus 34.353
External cuneate nucleus 23.357
Inferior olivary nucleus 30.703
Raphe obscures nucleus 31.578
Dorsal motor nucleus of vagus 55.493

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.1
Sample id Sample description nTPM
Area postrema
nTPM: 57.7
2306 Male, age 80, both hemispheres 96.3
2799 Male, age 61, both hemispheres 40.7
2054 Male, age 76, both hemispheres 36.1
Dorsal medullary reticular nucleus
nTPM: 69.7
2040 Female, age 85, both hemispheres 70.8
2088 Male, age 76, both hemispheres 70.7
2373 Male, age 61, both hemispheres 67.5
Dorsal motor vagal complex
nTPM: 49.8
2185 Male, age 76, both hemispheres 79.1
2000 Male, age 74, unknown 57.9
2133 Female, age 91, both hemispheres 57.9
2643 Male, age 74, both hemispheres 54.2
2844 Male, age 55, unknown 39.6
2807 Female, age 85, both hemispheres 39.5
2813 Female, age 72, unknown 35.4
2797 Male, age 61, both hemispheres 34.6
Gigantocellular reticular nuclei, medullary
nTPM: 75.8
2314 Male, age 61, both hemispheres 109.3
2387 Female, age 91, both hemispheres 85.4
1876 Female, age 85, both hemispheres 79.7
2022 Male, age 76, right hemisphere 67.7
2310 Male, age 80, both hemispheres 66.0
2462 Male, age 74, both hemispheres 46.8
Gigantocellular reticular nuclei, pars
nTPM: 60.5
2336 Male, age 61, both hemispheres 67.5
2706 Male, age 80, both hemispheres 63.6
2330 Male, age 80, both hemispheres 63.5
2084 Female, age 85, both hemispheres 61.5
2168 Male, age 76, both hemispheres 46.3
Inferior olive
nTPM: 76.3
2178 Male, age 61, both hemispheres 92.0
2563 Male, age 74, both hemispheres 78.0
2085 Female, age 85, both hemispheres 77.8
2628 Female, age 91, both hemispheres 71.4
2379 Male, age 80, both hemispheres 62.3
Lateral medullary reticular nucleus
nTPM: 80.2
2852 Male, age 80, both hemispheres 105.6
2305 Male, age 74, both hemispheres 96.2
2190 Female, age 85, both hemispheres 80.7
2374 Male, age 61, both hemispheres 74.6
2044 Male, age 76, both hemispheres 62.5
2804 Female, age 91, both hemispheres 61.8
Medial olivary nucleus
nTPM: 87.4
1943 Male, age 61, both hemispheres 113.5
1962 Male, age 76, both hemispheres 100.6
2851 Male, age 80, both hemispheres 71.1
2138 Female, age 91, both hemispheres 64.4
Medial vestibular nucleus
nTPM: 60.3
2803 Female, age 91, both hemispheres 75.4
2801 Male, age 74, both hemispheres 74.5
2093 Male, age 80, both hemispheres 73.7
2624 Male, age 61, both hemispheres 53.5
2743 Female, age 85, both hemispheres 51.3
2134 Male, age 76, both hemispheres 33.5
Motor hypoglossal nucleus
nTPM: 69.7
2125 Female, age 91, both hemispheres 95.5
2182 Male, age 80, both hemispheres 92.6
2132 Female, age 85, both hemispheres 84.6
2461 Male, age 61, both hemispheres 42.1
2277 Male, age 76, both hemispheres 33.6
Nucleus ambiguus
nTPM: 92.0
2071 Male, age 76, both hemispheres 104.5
2096 Female, age 85, both hemispheres 79.5
Nucleus cuneatus
nTPM: 73.4
2380 Male, age 80, both hemispheres 91.2
2100 Male, age 76, both hemispheres 88.9
2381 Male, age 80, both hemispheres 86.7
2808 Female, age 85, both hemispheres 75.9
2564 Male, age 74, both hemispheres 75.5
2131 Male, age 76, both hemispheres 66.6
2376 Male, age 61, both hemispheres 66.6
2805 Female, age 91, both hemispheres 63.4
2562 Male, age 61, both hemispheres 46.1
Nucleus gracilis
nTPM: 90.1
2382 Male, age 80, both hemispheres 111.5
2299 Female, age 85, both hemispheres 79.4
2627 Male, age 74, both hemispheres 79.3
Nucleus raphe obscurus
nTPM: 102.1
2142 Male, age 76, midline 111.0
2845 Female, age 85, midline 104.4
2800 Male, age 61, midline 90.9
Nucleus raphe pallidus
nTPM: 98.6
1924 Male, age 61, midline 111.9
2145 Male, age 76, midline 109.2
2183 Male, age 80, midline 74.8
Nucleus tractus solitarii
nTPM: 33.1
2656 Male, age 76, both hemispheres 36.8
2307 Male, age 80, both hemispheres 36.6
2144 Female, age 91, right hemisphere 31.7
2191 Female, age 85, both hemispheres 27.4
Parvicellular reticular nuclei
nTPM: 68.6
2119 Male, age 80, both hemispheres 72.2
2095 Male, age 76, both hemispheres 72.1
2558 Male, age 74, both hemispheres 61.6
Parvicellular reticular nuclei, medullary
nTPM: 62.0
2189 Female, age 91, both hemispheres 71.5
2091 Female, age 85, both hemispheres 60.4
2181 Male, age 80, left hemisphere 54.0
Peritrigeminal nucleus
nTPM: 73.2
2067 Female, age 85, both hemispheres 75.7
2179 Male, age 61, both hemispheres 73.7
2136 Male, age 76, both hemispheres 70.1
Prepositus hypoglossal nucleus
nTPM: 63.6
2855 Female, age 85, right hemisphere 76.5
2086 Male, age 80, both hemispheres 50.6
Spinal trigeminal nucleus, caudal
nTPM: 76.4
2312 Male, age 61, both hemispheres 83.0
2447 Male, age 76, both hemispheres 82.2
2308 Male, age 80, both hemispheres 81.9
2390 Female, age 91, both hemispheres 70.9
2642 Male, age 74, both hemispheres 64.1
Spinal trigeminal nucleus, interpolar
nTPM: 53.0
2389 Female, age 91, both hemispheres 67.0
2033 Male, age 80, both hemispheres 61.2
2386 Female, age 85, both hemispheres 59.9
2625 Male, age 61, both hemispheres 41.1
2066 Male, age 76, right hemisphere 36.0
Spinal vestibular nucleus
nTPM: 73.2
2748 Male, age 76, both hemispheres 96.3
2384 Male, age 74, both hemispheres 85.3
2186 Female, age 91, both hemispheres 81.5
2780 Male, age 80, both hemispheres 69.7
2806 Female, age 85, both hemispheres 69.5
2796 Male, age 61, both hemispheres 37.0
Superior vestibular nucleus
nTPM: 56.1
2015 Male, age 80, both hemispheres 67.4
2061 Male, age 76, both hemispheres 59.5
2383 Male, age 74, both hemispheres 41.4
Ventral medullary reticular nucleus
nTPM: 85.8
2060 Male, age 76, both hemispheres 89.0
2372 Male, age 61, both hemispheres 82.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 72.1
2118 Male, age 80, both hemispheres 92.8
2180 Male, age 61, both hemispheres 76.8
2741 Female, age 85, both hemispheres 67.3
1986 Male, age 76, both hemispheres 62.4
2302 Female, age 91, both hemispheres 61.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 46.7
FF:10038-101F2 18-64 years, mixed 68.5
FF:10174-103C3 60 years, female 40.2
FF:10155-103A2 76 years, female 31.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 53.2
Samples: 4

Max nTPM: 59.8
Min nTPM: 43.7
Sample A Female 54.9
Sample B Female 43.7
Sample C Male 54.3
Sample D Male 59.8

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 7.4
70565891 Antisense, RP_050628_01_F02, Mouse strain C57BL/6J (56 days, male) 7.4

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