MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.6 nTPM
HPA Brain:59.0 nTPM
GTEx:12.6 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Pig:227.4 nTPM
Mouse:5.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.8
1870 Female, age 42, unknown 44.4
2411 Female, age 72, unknown 41.7
1833 Male, age 53, unknown 36.8
1827 Male, age 72, unknown 34.8
1830 Male, age 51, unknown 30.7
2586 Male, age 75, left hemisphere 30.6
2666 Male, age 74, left hemisphere 28.4
2828 Female, age 72, unknown 27.0
2219 Male, age 76, both hemispheres 26.3
2019 Male, age 18, unknown 7.7
Dorsal raphe nucleus
nTPM: 48.1
2047 Male, age 72, unknown 62.9
2298 Female, age 72, unknown 60.1
2750 Male, age 76, both hemispheres 41.7
2016 Female, age 72, unknown 39.5
1828 Male, age 53, unknown 36.4
Inferior colliculus
nTPM: 33.6
2849 Male, age 72, unknown 43.7
1848 Female, age 42, unknown 38.7
2097 Female, age 72, unknown 26.0
1890 Male, age 53, unknown 25.9
Median raphe nucleus
nTPM: 59.0
2220 Male, age 76, midline 59.0
Periaquaductal grey, anterior
nTPM: 45.4
1947 Male, age 18, unknown 58.9
1795 Male, age 51, unknown 39.7
2502 Female, age 75, unknown 37.6
Periaquaductal grey, dorsal
nTPM: 42.9
1840 Male, age 53, unknown 57.4
2850 Male, age 76, both hemispheres 43.2
2464 Female, age 72, unknown 39.7
1831 Male, age 72, unknown 31.5
Periaquaductal grey, lateral
nTPM: 40.4
2053 Male, age 18, unknown 48.3
2140 Male, age 76, both hemispheres 46.1
2272 Male, age 74, both hemispheres 26.8
Pretectal area
nTPM: 29.2
2825 Male, age 18, unknown 66.5
2224 Female, age 72, unknown 57.8
2316 Male, age 76, right hemisphere 35.1
2667 Female, age 75, unknown 32.2
2273 Male, age 74, both hemispheres 27.9
2407 Male, age 75, both hemispheres 26.1
1816 Male, age 51, unknown 17.7
1944 Female, age 72, unknown 17.0
1815 Male, age 53, unknown 15.1
2007 Male, age 72, unknown 13.8
1817 Female, age 42, unknown 12.2
Red nucleus
nTPM: 18.5
2584 Male, age 75, left hemisphere 28.8
2588 Male, age 74, left hemisphere 26.8
2227 Male, age 72, unknown 22.2
2769 Male, age 72, unknown 21.6
2725 Female, age 75, unknown 20.7
1821 Female, age 72, unknown 17.3
1904 Male, age 53, unknown 16.5
1954 Female, age 42, unknown 16.2
2823 Male, age 76, right hemisphere 15.4
2503 Female, age 72, unknown 15.2
1865 Male, age 51, unknown 12.6
2785 Male, age 18, unknown 8.5
Substantia nigra
nTPM: 26.4
2699 Male, age 18, unknown 35.9
2241 Male, age 72, unknown 31.0
1851 Male, age 51, unknown 27.4
2665 Male, age 74, both hemispheres 27.4
1916 Female, age 42, unknown 26.2
2583 Male, age 75, right hemisphere 25.6
1941 Male, age 53, unknown 24.7
2590 Female, age 75, unknown 23.5
2409 Female, age 72, unknown 22.0
1889 Female, age 72, unknown 20.2
Superior colliculus
nTPM: 26.9
1839 Male, age 51, unknown 41.2
1796 Male, age 53, unknown 35.0
2261 Male, age 18, unknown 30.4
1895 Male, age 76, right hemisphere 29.0
2587 Male, age 74, left hemisphere 29.0
2664 Male, age 75, both hemispheres 28.8
2668 Female, age 75, unknown 22.6
1913 Female, age 42, unknown 19.1
2087 Female, age 72, unknown 17.8
1995 Male, age 72, unknown 15.5
Ventral tegmental area
nTPM: 37.4
2021 Male, age 53, unknown 46.6
1942 Male, age 51, unknown 44.7
1915 Female, age 42, unknown 38.3
2218 Male, age 76, both hemispheres 34.8
2223 Female, age 72, unknown 33.1
2410 Female, age 72, unknown 27.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.6
Samples: 139

Max nTPM: 27.8
Min nTPM: 4.4
Std nTPM: 4.6
Median nTPM: 11.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 27.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 25.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 25.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 24.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 22.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 21.9
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 21.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 21.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 20.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 19.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 19.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.8
FF:10158-103A5 76 years, female 16.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 227.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 210.2
Samples: 4

Max nTPM: 323.0
Min nTPM: 47.3
Sample A Female 322.9
Sample B Female 147.7
Sample C Male 323.0
Sample D Male 47.3
Midbrain
nTPM: 188.7
Samples: 4

Max nTPM: 295.3
Min nTPM: 56.0
Sample A Female 56.0
Sample B Female 181.6
Sample C Male 221.7
Sample D Male 295.3
Periaqueductal gray
nTPM: 227.4
Samples: 3

Max nTPM: 314.5
Min nTPM: 183.8
Sample B Female 183.8
Sample C Male 314.5
Sample D Male 184.0
Superior colliculi
nTPM: 186.9
Samples: 4

Max nTPM: 295.7
Min nTPM: 79.4
Sample A Female 295.7
Sample B Female 79.4
Sample C Male 163.5
Sample D Male 209.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.7
Sample A Male 4.7
Sample B Male 5.0
Sample C Female 6.3
Sample D Female 5.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71570749 Antisense, RP_050512_02_B08, Mouse strain C57BL/6J (56 days, male) 0.3

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