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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:325.9 nTPM
HPA Brain:221.8 nTPM
GTEx:325.9 nTPM
FANTOM5:224.8 Scaled Tags Per Million
Pig:127.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 162.8
2048 Male, age 55, midline 185.2
2565 Male, age 75, midline 184.4
1981 Female, age 72, midline 183.9
2816 Male, age 47, midline 133.1
2194 Female, age 79, both hemispheres 127.5
Cervical spinal cord, dorsal horn
nTPM: 167.8
2296 Male, age 66, both hemispheres 214.5
2069 Male, age 47, both hemispheres 198.9
2173 Female, age 72, unknown 194.8
1877 Male, age 55, unknown 167.0
2297 Male, age 75, both hemispheres 122.1
2721 Male, age 90, both hemispheres 109.6
Cervical spinal cord, ventral horn
nTPM: 221.8
2480 Male, age 75, both hemispheres 309.9
2809 Male, age 90, both hemispheres 285.3
2098 Female, age 72, unknown 229.4
2295 Male, age 66, both hemispheres 214.5
2068 Male, age 55, unknown 158.2
2820 Female, age 79, both hemispheres 133.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

325.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 325.9
Samples: 159

Max nTPM: 682.0
Min nTPM: 155.1
Std nTPM: 75.9
Median nTPM: 315.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 682.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 513.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 502.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 499.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 487.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 487.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 480.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 474.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 470.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 468.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 442.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 440.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 435.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 434.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 434.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 430.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 430.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 426.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 423.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 418.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 414.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 409.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 407.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 402.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 399.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 392.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 391.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 387.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 383.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 382.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 380.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 379.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 378.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 377.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 375.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 373.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 367.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 367.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 367.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 366.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 366.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 364.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 363.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 360.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 359.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 359.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 357.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 356.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 354.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 353.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 353.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 352.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 351.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 347.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 341.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 339.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 339.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 337.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 336.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 335.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 333.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 333.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 332.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 331.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 330.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 329.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 328.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 326.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 325.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 324.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 323.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 323.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 320.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 319.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 318.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 318.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 317.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 316.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 315.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 315.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 315.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 315.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 314.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 313.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 312.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 310.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 310.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 307.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 307.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 307.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 306.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 305.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 305.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 303.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 303.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 301.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 301.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 300.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 300.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 298.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 297.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 297.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 296.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 292.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 292.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 292.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 290.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 288.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 287.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 286.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 284.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 283.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 283.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 283.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 279.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 277.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 276.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 276.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 273.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 270.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 270.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 269.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 269.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 267.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 266.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 264.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 264.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 263.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 259.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 253.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 251.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 251.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 250.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 250.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 249.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 248.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 247.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 243.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 242.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 241.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 240.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 239.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 236.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 236.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 236.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 236.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 236.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 235.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 235.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 232.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 226.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 225.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 220.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 220.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 219.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 203.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 196.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 196.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 155.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

224.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 224.8
FF:10181-103D1 60 years, female 237.8
FF:10159-103A6 76 years, female 211.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 125.9
Samples: 4

Max nTPM: 143.8
Min nTPM: 108.6
Sample A Female 108.6
Sample B Female 140.8
Sample C Male 143.8
Sample D Male 110.3
Ventral spinal cord
nTPM: 127.3
Samples: 4

Max nTPM: 137.9
Min nTPM: 114.4
Sample A Female 114.4
Sample B Female 127.1
Sample C Male 129.8
Sample D Male 137.9

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