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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

43.063
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:71.3 nTPM
HPA Brain:134.4 nTPM
GTEx:71.3 nTPM
FANTOM5:234.3 Scaled Tags Per Million
Pig:117.8 nTPM
Mouse:28.5 nTPM

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA071379
Amygdala mean intensity 43.063
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract 42.676
Basal medial amygdaloid nucleus 31.626
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 39.383
Cortical amygdala 40.638
Central amygdala 43.063
Medial amygdaloid nucleus 36.707

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.4
Sample id Sample description nTPM
Amygdala
nTPM: 134.4
2514 Male, age 75, right hemisphere 154.6
2814 Male, age 76, right hemisphere 154.4
1987 Female, age 91, left hemisphere 147.9
2517 Female, age 94, left hemisphere 109.7
2695 Female, age 67, right hemisphere 105.3
Basal amygdala
nTPM: 109.2
2609 Male, age 75, right hemisphere 140.3
1955 Male, age 76, both hemispheres 127.8
2243 Female, age 91, right hemisphere 109.8
2110 Male, age 80, left hemisphere 108.7
2685 Female, age 94, left hemisphere 90.2
2827 Female, age 67, right hemisphere 78.5
Central amygdala
nTPM: 116.2
1905 Male, age 76, both hemispheres 145.1
2701 Female, age 91, right hemisphere 137.6
2239 Male, age 80, left hemisphere 118.6
2515 Male, age 75, right hemisphere 115.0
2826 Female, age 94, left hemisphere 64.9
Corticomedial amygdala
nTPM: 113.2
2428 Male, age 75, right hemisphere 128.9
2242 Female, age 91, right hemisphere 120.5
2829 Male, age 80, left hemisphere 116.2
2240 Male, age 76, both hemispheres 115.1
2429 Female, age 94, left hemisphere 108.4
2535 Female, age 67, right hemisphere 90.0
Lateral amygdala
nTPM: 110.8
2255 Female, age 91, right hemisphere 141.9
2516 Male, age 75, right hemisphere 131.3
1883 Male, age 76, both hemispheres 126.0
2256 Male, age 80, left hemisphere 123.8
2534 Female, age 94, left hemisphere 73.3
2830 Female, age 67, right hemisphere 68.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 71.3
Samples: 152

Max nTPM: 163.2
Min nTPM: 16.3
Std nTPM: 28.2
Median nTPM: 64.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 163.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 155.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 144.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 133.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 128.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 118.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 118.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 116.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 115.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 115.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 114.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 114.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 109.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 108.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 108.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 107.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 107.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 105.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 103.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 103.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 103.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 103.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 100.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 99.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 99.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 99.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 98.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 98.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 97.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 97.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 97.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 97.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 94.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 93.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 92.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 92.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 92.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 92.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 91.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 91.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 90.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 90.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 89.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 87.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 85.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 85.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 85.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 84.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 84.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 84.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 83.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 83.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 83.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 83.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 82.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 82.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 82.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 81.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 81.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 81.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 79.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 79.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 78.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 77.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 76.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 72.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 71.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 69.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 69.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 68.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 68.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 65.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 65.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 65.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 64.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 64.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 63.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 63.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 63.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 62.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 62.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 62.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 61.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 61.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 60.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 60.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 60.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 60.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 59.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 59.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 58.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 58.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 58.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 57.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 57.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 57.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 56.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 56.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 56.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 55.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 55.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 55.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 55.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 55.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 54.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 53.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 53.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 52.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 51.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 51.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 51.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 50.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 49.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 48.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 48.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 47.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 46.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 46.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 46.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 45.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 45.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 45.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 44.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 44.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 44.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 42.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 42.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 41.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 40.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 40.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 39.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 38.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 37.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 37.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 37.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 34.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 34.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 33.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 33.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 33.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 33.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 32.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 32.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 29.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 28.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 24.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 22.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 17.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 16.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

234.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 234.3
FF:10151-102I7 76 years, female 234.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.8
Pig sample Sample description nTPM
Amygdala
nTPM: 117.8
Samples: 4

Max nTPM: 133.6
Min nTPM: 111.7
Sample A Female 133.6
Sample B Female 113.0
Sample C Male 113.0
Sample D Male 111.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 28.5
Samples: 4

Max nTPM: 28.9
Min nTPM: 28.3
Sample A Male 28.9
Sample B Male 28.3
Sample C Female 28.5
Sample D Female 28.3

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