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SOX2
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:66.8 nTPM
FANTOM5:188.6 Scaled Tags Per Million
Pig:106.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045725Antibody CAB079745
Glial cells MediumMedium
Neuronal cells LowLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 66.8
Samples: 246

Max nTPM: 158.5
Min nTPM: 14.0
Std nTPM: 25.5
Median nTPM: 62.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 158.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 153.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 152.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 147.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 142.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 129.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 129.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 125.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 123.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 120.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 115.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 114.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 113.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 113.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 112.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 110.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 108.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 103.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 102.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 102.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 102.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 101.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 101.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 101.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 100.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 99.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 96.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 96.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 96.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 96.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 95.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 94.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 94.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 94.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 93.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 93.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 92.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 91.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 91.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 90.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 90.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 89.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 89.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 88.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 88.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 87.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 87.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 87.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 86.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 85.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 84.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 84.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 84.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 84.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 84.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 83.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 83.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 82.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 81.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 81.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 81.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 81.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 80.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 78.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 78.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 78.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 78.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 78.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 77.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 77.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 77.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 77.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 77.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 76.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 76.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 76.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 75.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 75.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 75.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 75.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 75.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 74.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 74.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 74.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 73.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 73.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 73.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 72.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 72.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 72.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 71.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 70.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 70.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 70.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 70.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 70.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 69.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 69.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 69.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 69.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 68.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 68.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 68.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 68.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 68.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 67.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 67.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 67.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 66.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 65.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 65.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 65.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 65.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 65.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 65.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 64.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 64.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 64.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 63.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 63.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 63.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 63.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 62.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 62.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 62.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 62.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 62.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 62.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 61.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 61.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 60.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 60.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 60.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 60.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 60.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 60.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 59.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 59.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 59.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 58.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 58.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 58.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 58.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 58.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 58.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 58.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 57.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 57.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 57.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 57.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 56.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 56.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 56.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 56.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 56.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 55.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 55.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 54.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 54.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 53.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 53.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 53.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 53.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 53.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 52.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 52.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 52.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 52.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 51.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 51.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 51.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 50.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 50.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 50.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 49.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 49.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 49.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 49.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 49.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 49.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 48.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 48.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 48.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 48.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 48.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 48.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 47.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 47.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 47.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 47.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 47.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 46.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 46.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 46.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 46.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 45.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 45.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 45.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 45.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 44.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 44.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 44.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 44.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 44.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 44.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 43.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 43.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 42.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 42.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 42.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 41.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 40.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 40.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 39.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 39.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 39.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 39.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 39.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 39.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 39.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 39.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 38.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 38.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 38.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 37.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 37.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 36.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 36.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 36.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 35.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 35.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 35.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 34.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 34.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 33.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 33.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 32.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 31.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 31.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 31.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 25.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 24.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 22.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 16.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 16.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 14.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

188.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 188.6
FF:10164-103B2 76 years, female 188.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.4
Pig sample Sample description nTPM
Caudate
nTPM: 106.4
Samples: 4

Max nTPM: 116.5
Min nTPM: 96.5
Sample A Female 102.7
Sample B Female 109.9
Sample C Male 116.5
Sample D Male 96.5

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