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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

47.960
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:108.4 nTPM
GTEx:49.8 nTPM
FANTOM5:215.0 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045725Antibody CAB079745
Glial cells MediumMedium
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA071379
Hippocampal formation mean intensity 47.960
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 35.005
Molecular layer of the dentate gyrus 29.447
Granular dentate gyrus 45.905
CA1 - oriens layer 34.386
CA1 - pyramidal layer 47.146
CA1 - radiatum layer 30.723
CA2 - oriens layer 38.426
CA2 - pyramidal layer 44.068
CA2 - radiatum layer 38.950
CA3 - oriens layer 36.372
CA3 - pyramidal layer 42.941
CA3 - radiatum layer 34.015
Stratum lucidum 36.107
Lacunosum moleculare 47.960
Subiculum 33.395

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.4
Sample id Sample description nTPM
Hippocampus
nTPM: 108.4
2529 Female, age 94, left hemisphere 145.1
1911 Female, age 85, right hemisphere 112.2
1855 Male, age 76, left hemisphere 109.0
2148 Female, age 91, left hemisphere 103.3
2621 Female, age 67, right hemisphere 93.7
1898 Male, age 80, left hemisphere 87.0

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.8
Samples: 197

Max nTPM: 122.7
Min nTPM: 14.8
Std nTPM: 19.4
Median nTPM: 46.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 122.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 110.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 105.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 97.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 93.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 90.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 88.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 88.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 86.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 85.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 84.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 82.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 82.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 82.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 80.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 78.6
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 78.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 78.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 77.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 76.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 75.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 75.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 73.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 72.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 72.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 72.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 71.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 71.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 70.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 70.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 70.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 70.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 69.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 69.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 68.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 68.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 67.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 65.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 65.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 65.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 65.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 65.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 65.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 64.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 64.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 64.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 64.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 63.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 62.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 62.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 61.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 60.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 60.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 59.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 59.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 59.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 59.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 58.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 58.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 58.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 57.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 57.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 56.9
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 56.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 56.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 56.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 56.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 56.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 55.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 55.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 55.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 54.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 54.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 54.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 54.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 53.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 53.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 53.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 53.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 53.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 52.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 52.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 52.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 52.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 52.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 52.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 51.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 50.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 49.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 49.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 48.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 48.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 48.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 48.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 47.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 47.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 46.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 46.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 46.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 46.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 45.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 45.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 45.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 45.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 45.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 45.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 44.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 44.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 44.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 44.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 44.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 43.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 43.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 43.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 43.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 43.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 43.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 43.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 42.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 41.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 41.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 41.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 41.0
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 40.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 40.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 39.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 39.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 39.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 39.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 38.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 38.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 38.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 38.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 37.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 37.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 37.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 36.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 36.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 36.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 36.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 36.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 36.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 35.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 35.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 35.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 35.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 35.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 35.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 34.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 34.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 34.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 34.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 34.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 34.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 33.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 33.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 33.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 33.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 33.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 32.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 32.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 32.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 31.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 31.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 31.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 30.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 30.9
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 30.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 30.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 30.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 29.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 28.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 28.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 28.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 27.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 27.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 27.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 26.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 26.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 25.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 25.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 25.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 25.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 25.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 23.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 23.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 23.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 23.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 22.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 22.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 21.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 20.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 19.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 18.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 18.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 14.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 14.8
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 215.0
FF:10153-102I9 76 years, female 297.1
FF:10169-103B7 60 years, female 132.9

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