BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.5 nTPM
HPA Brain:80.0 nTPM
GTEx:37.5 nTPM
FANTOM5:21.5 Scaled Tags Per Million
Pig:94.5 nTPM
Mouse:42.2 nTPM
Allen mouse:4.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 80.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 60.7
1857 Female, age 85, left hemisphere 79.0
2289 Male, age 61, right hemisphere 73.7
2290 Female, age 72, unknown 68.8
2288 Male, age 75, left hemisphere 61.9
1781 Male, age 74, unknown 57.9
1854 Male, age 80, left hemisphere 54.0
2481 Female, age 94, left hemisphere 47.6
2846 Female, age 79, unknown 42.5
Globus pallidus, externus
nTPM: 42.1
2567 Female, age 72, unknown 57.1
2646 Male, age 61, right hemisphere 55.0
2772 Female, age 79, unknown 46.4
1996 Male, age 80, right hemisphere 28.5
2395 Male, age 75, both hemispheres 23.8
Globus pallidus, internus
nTPM: 30.9
2483 Female, age 94, right hemisphere 39.3
2566 Female, age 72, unknown 36.8
1818 Male, age 74, unknown 35.3
2287 Male, age 75, right hemisphere 28.2
2037 Male, age 80, right hemisphere 27.9
2111 Female, age 85, right hemisphere 27.9
2778 Female, age 91, both hemispheres 20.7
Nucleus accumbens
nTPM: 60.2
1806 Female, age 85, left hemisphere 81.4
2286 Male, age 75, left hemisphere 73.5
1783 Male, age 74, unknown 71.8
2824 Male, age 61, right hemisphere 66.2
1856 Female, age 91, right hemisphere 59.2
2698 Female, age 72, unknown 48.1
2732 Male, age 80, right hemisphere 47.8
2391 Female, age 94, left hemisphere 33.5
Nucleus basalis of Meynert
nTPM: 49.1
2484 Female, age 94, left hemisphere 65.0
2569 Male, age 61, both hemispheres 55.5
2821 Male, age 75, both hemispheres 39.1
2393 Male, age 80, right hemisphere 36.8
Nucleus of the diagonal band
nTPM: 80.0
2029 Male, age 61, right hemisphere 90.2
2195 Female, age 85, both hemispheres 88.6
2775 Male, age 80, right hemisphere 81.9
1979 Male, age 74, unknown 72.9
1812 Female, age 91, both hemispheres 66.3
Putamen
nTPM: 46.6
1838 Male, age 80, right hemisphere 54.5
1829 Male, age 74, unknown 48.5
2466 Female, age 79, unknown 48.0
1937 Female, age 91, right hemisphere 46.2
2489 Female, age 72, unknown 46.2
2647 Male, age 75, left hemisphere 42.6
2482 Female, age 94, left hemisphere 40.4
Septal nuclei
nTPM: 75.1
2059 Female, age 85, both hemispheres 103.1
1960 Male, age 74, unknown 93.0
2031 Female, age 72, unknown 68.5
2394 Male, age 61, left hemisphere 68.4
2009 Female, age 91, both hemispheres 65.0
2199 Male, age 80, right hemisphere 64.2
2629 Female, age 94, right hemisphere 63.5
Stria terminalis, bed nucleus
nTPM: 72.3
2486 Female, age 94, both hemispheres 84.1
2201 Male, age 74, unknown 67.2
1974 Female, age 91, both hemispheres 65.5

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 37.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.3
Samples: 246

Max nTPM: 49.8
Min nTPM: 6.3
Std nTPM: 8.4
Median nTPM: 27.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 49.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 46.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 45.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 45.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 44.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 43.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 43.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 43.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 42.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 42.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 41.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.5
Samples: 246

Max nTPM: 73.7
Min nTPM: 3.8
Std nTPM: 12.2
Median nTPM: 37.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 73.7
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 67.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 66.2
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 65.3
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 63.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 63.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 62.8
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 62.3
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 61.2
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 59.5
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 58.9
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Brain - Putamen (basal ganglia)
Average nTPM: 22.7
Samples: 205

Max nTPM: 48.7
Min nTPM: 4.5
Std nTPM: 8.6
Median nTPM: 22.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 48.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 48.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 45.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 44.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 42.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 42.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 40.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 39.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 38.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 37.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 36.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.7
FF:10164-103B2 76 years, female 13.7
Nucleus accumbens
Scaled Tags Per Million: 21.5
FF:10037-101F1 23-56 years, mixed 21.5
Putamen
Scaled Tags Per Million: 16.3
FF:10176-103C5 60 years, female 16.3
Globus pallidus
Scaled Tags Per Million: 4.1
FF:10161-103A8 76 years, female 5.2
FF:10175-103C4 60 years, female 3.1

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 94.5
Pig sample Sample description nTPM
Caudate
nTPM: 94.5
Samples: 4

Max nTPM: 120.7
Min nTPM: 61.2
Sample A Female 61.2
Sample B Female 102.0
Sample C Male 120.7
Sample D Male 94.1
Putamen
nTPM: 82.1
Samples: 4

Max nTPM: 103.6
Min nTPM: 48.1
Sample A Female 48.1
Sample B Female 84.5
Sample C Male 92.0
Sample D Male 103.6
Septum
nTPM: 48.0
Samples: 4

Max nTPM: 60.8
Min nTPM: 36.0
Sample A Female 54.5
Sample B Female 60.8
Sample C Male 40.7
Sample D Male 36.0
Ventral pallidum
nTPM: 67.6
Samples: 4

Max nTPM: 75.1
Min nTPM: 59.8
Sample A Female 59.8
Sample B Female 75.1
Sample C Male 70.6
Sample D Male 64.9

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 42.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.0
Samples: 4

Max nTPM: 57.2
Min nTPM: 34.9
Sample A Male 40.3
Sample B Male 57.2
Sample C Female 35.6
Sample D Female 34.9
Septum
nTPM: 33.3
Samples: 4

Max nTPM: 35.8
Min nTPM: 31.6
Sample A Male 35.8
Sample B Male 33.9
Sample C Female 31.6
Sample D Female 31.9
Ventral forebrain
nTPM: 42.2
Samples: 4

Max nTPM: 45.3
Min nTPM: 37.4
Sample A Male 45.3
Sample B Male 37.4
Sample C Female 42.1
Sample D Female 44.0

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 4.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.4
71283681 Antisense, RP_050825_01_C11, Mouse strain C57BL/6J (56 days, male) 4.4
Pallidum
Expression energy: 1.5
71283681 Antisense, RP_050825_01_C11, Mouse strain C57BL/6J (56 days, male) 1.5

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