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TNRC18
HPA
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  • TNRC18
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TNRC18
Synonyms CAGL79, KIAA1856, TNRC18A
Gene descriptioni

Full gene name according to HGNC.

Trinucleotide repeat containing 18
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 7
Cytoband p22.1
Chromosome location (bp) 5306790 - 5425414
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000182095 (version 109)
Entrez gene 84629
HGNC HGNC:11962
UniProt O15417 (UniProt - Evidence at protein level)
neXtProt NX_O15417
GeneCards TNRC18
Antibodypedia TNRC18 antibodies


PROTEIN FUNCTION
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable chromatin binding activity. Located in cytosol; mitochondrion; and nucleus. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TNRC18-201
ENSP00000329902
ENST00000328270
H7BXS9
[Direct mapping] Trinucleotide repeat-containing gene 18 protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
407 aa
42.5 kDa
No 0
TNRC18-202
ENSP00000382364
ENST00000399434
A8MTZ4
[Direct mapping] HCG96198, isoform CRA_d; Trinucleotide repeat-containing gene 18 protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
130 aa
14.1 kDa
No 0
TNRC18-203
ENSP00000382452
ENST00000399537
H9KVB4
[Direct mapping] Trinucleotide repeat-containing gene 18 protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003682 [chromatin binding]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005829 [cytosol]
GO:0031965 [nuclear membrane]
Show all
2968 aa
314.5 kDa
No 0
TNRC18-204
ENSP00000413911
ENST00000413081
H7C3U5
[Direct mapping] Trinucleotide repeat-containing gene 18 protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
308 aa
32.4 kDa
No 0
TNRC18-205
ENSP00000395538
ENST00000430969
O15417
[Direct mapping] Trinucleotide repeat-containing gene 18 protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005829 [cytosol]
GO:0031965 [nuclear membrane]
Show all
2968 aa
314.5 kDa
No 0
TNRC18-206
ENSP00000410856
ENST00000434361
C9J9K1
[Direct mapping] Trinucleotide repeat-containing gene 18 protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
99 aa
10.3 kDa
No 0
TNRC18-207
ENSP00000395990
ENST00000440081
H7C0N9
[Direct mapping] Trinucleotide repeat-containing gene 18 protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
252 aa
28.2 kDa
No 0
TNRC18-208
ENSP00000398809
ENST00000455076
H7C177
[Direct mapping] Trinucleotide repeat-containing gene 18 protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
192 aa
20.4 kDa
No 0

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