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ERCC6L2
HPA
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  • SUMMARY

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  • ERCC6L2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ERCC6L2
Synonyms C9orf102, FLJ37706, HEBO, RAD26L
Gene descriptioni

Full gene name according to HGNC.

ERCC excision repair 6 like 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 9
Cytoband q22.32
Chromosome location (bp) 95871264 - 96121154
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000182150 (version 109)
Entrez gene 375748
HGNC HGNC:26922
UniProt Q5T890 (UniProt - Evidence at protein level)
neXtProt NX_Q5T890
GeneCards ERCC6L2
Antibodypedia ERCC6L2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

May be involved in early DNA damage response.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

DNA-binding, Helicase, Hydrolase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

DNA damage, DNA repair
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the Snf2 family of helicase-like proteins. The encoded protein may play a role in DNA repair and mitochondrial function. Mutations in this gene have been associated with bone marrow failure syndrome 2. Alternatively spliced transcript variants that encode different protein isoforms have been described. [provided by RefSeq, Apr 2014]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ERCC6L2-201
ENSP00000288985
ENST00000288985
A0A5F9UKL4
[Direct mapping] DNA excision repair protein ERCC-6-like 2
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0006338 [chromatin remodeling]
GO:0016787 [hydrolase activity]
GO:0140658 [ATP-dependent chromatin remodeler activity]
Show all
701 aa
80 kDa
No 0
ERCC6L2-202
ENSP00000384215
ENST00000402838
H0Y3T7
[Direct mapping] DNA excision repair protein ERCC-6-like 2
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0005654 [nucleoplasm]
GO:0006338 [chromatin remodeling]
GO:0016787 [hydrolase activity]
GO:0140658 [ATP-dependent chromatin remodeler activity]
Show all
1058 aa
120 kDa
No 0
ERCC6L2-203
ENSP00000395345
ENST00000426805
X6RE28
[Direct mapping] DNA excision repair protein ERCC-6-like 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0006338 [chromatin remodeling]
GO:0016787 [hydrolase activity]
GO:0140658 [ATP-dependent chromatin remodeler activity]
Show all
595 aa
68 kDa
No 0
ERCC6L2-208
ENSP00000499221
ENST00000653738
A0A590UJ07
[Direct mapping] DNA excision repair protein ERCC-6-like 2
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0006338 [chromatin remodeling]
GO:0016787 [hydrolase activity]
GO:0140658 [ATP-dependent chromatin remodeler activity]
Show all
1550 aa
176.1 kDa
No 0
ERCC6L2-211
ENSP00000499371
ENST00000665077
Q5T890
[Direct mapping] DNA excision repair protein ERCC-6-like 2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000166 [nucleotide binding]
GO:0003677 [DNA binding]
GO:0004386 [helicase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0006281 [DNA repair]
GO:0006338 [chromatin remodeling]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0016787 [hydrolase activity]
GO:0019901 [protein kinase binding]
GO:0032991 [protein-containing complex]
GO:0034614 [cellular response to reactive oxygen species]
GO:0036297 [interstrand cross-link repair]
GO:0140658 [ATP-dependent chromatin remodeler activity]
Show all
201 aa
23 kDa
No 1
ERCC6L2-212
ENSP00000499429
ENST00000668220
A0A590UJI9
[Direct mapping] DNA excision repair protein ERCC-6-like 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Show all
49 aa
5.5 kDa
No 0
ERCC6L2-224
ENSP00000507810
ENST00000683350
A0A804HK79
[Direct mapping] DNA excision repair protein ERCC-6-like 2
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0006338 [chromatin remodeling]
GO:0016787 [hydrolase activity]
GO:0140658 [ATP-dependent chromatin remodeler activity]
Show all
1173 aa
132.9 kDa
No 0
ERCC6L2-225
ENSP00000507442
ENST00000683937
A0A804HJC4
[Direct mapping] DNA excision repair protein ERCC-6-like 2
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0006338 [chromatin remodeling]
GO:0016787 [hydrolase activity]
GO:0140658 [ATP-dependent chromatin remodeler activity]
Show all
1535 aa
174.3 kDa
No 0
ERCC6L2-226
ENSP00000507383
ENST00000683991
A0A804HJ75
[Direct mapping] DNA excision repair protein ERCC-6-like 2
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0006338 [chromatin remodeling]
GO:0016787 [hydrolase activity]
GO:0140658 [ATP-dependent chromatin remodeler activity]
Show all
1186 aa
134.3 kDa
No 0

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