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ARL6IP4
HPA
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  • ARL6IP4
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ARL6IP4
Synonyms SFRS20, SR-25, SRp25, SRrp37
Gene descriptioni

Full gene name according to HGNC.

ADP ribosylation factor like GTPase 6 interacting protein 4
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband q24.31
Chromosome location (bp) 122980060 - 122982913
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

11
Ensembl ENSG00000182196 (version 109)
Entrez gene 51329
HGNC HGNC:18076
UniProt Q66PJ3 (UniProt - Evidence at protein level)
neXtProt NX_Q66PJ3
GeneCards ARL6IP4
Antibodypedia ARL6IP4 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Involved in modulating alternative pre-mRNA splicing with either 5' distal site activation or preferential use of 3' proximal site. In case of infection by Herpes simplex virus (HSVI), may act as a splicing inhibitor of HSVI pre-mRNA.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

mRNA processing, mRNA splicing
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables identical protein binding activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ARL6IP4-201
ENSP00000313422
ENST00000315580
Q66PJ3
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
A0A8C8KBE9
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0016607 [nuclear speck]
Show all
237 aa
26.4 kDa
No 0
ARL6IP4-202
ENSP00000350532
ENST00000357866
Q66PJ3
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
A0A0C4DH18
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0016607 [nuclear speck]
Show all
181 aa
20.2 kDa
No 0
ARL6IP4-204
ENSP00000376230
ENST00000392435
Q66PJ3
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
H7BZV4
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0016607 [nuclear speck]
Show all
215 aa
24.2 kDa
No 0
ARL6IP4-205
ENSP00000413132
ENST00000412505
F8WEP2
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0016607 [nuclear speck]
Show all
170 aa
19.1 kDa
No 0
ARL6IP4-206
ENSP00000441406
ENST00000413381
F5GYV5
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0016607 [nuclear speck]
Show all
211 aa
23.7 kDa
No 0
ARL6IP4-207
ENSP00000406036
ENST00000426960
Q66PJ3
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
A0A0C4DG62
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0016607 [nuclear speck]
GO:0042802 [identical protein binding]
Show all
218 aa
24.6 kDa
No 0
ARL6IP4-208
ENSP00000396365
ENST00000439686
F8WCT1
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0016607 [nuclear speck]
Show all
229 aa
25.6 kDa
No 0
ARL6IP4-210
ENSP00000414847
ENST00000453766
F8WCT1
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0016607 [nuclear speck]
Show all
229 aa
25.6 kDa
No 0
ARL6IP4-211
ENSP00000396723
ENST00000454885
Q66PJ3
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0016607 [nuclear speck]
Show all
226 aa
25.3 kDa
No 0
ARL6IP4-212
ENSP00000391598
ENST00000456762
Q66PJ3
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
H7BZV4
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0016607 [nuclear speck]
Show all
215 aa
24.2 kDa
No 0
ARL6IP4-220
ENSP00000442718
ENST00000543566
Q66PJ3
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
A0A0C4DG62
[Direct mapping] ADP-ribosylation factor-like protein 6-interacting protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0016607 [nuclear speck]
GO:0042802 [identical protein binding]
Show all
218 aa
24.6 kDa
No 0

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