MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.2 nTPM
HPA Brain:99.3 nTPM
GTEx:61.2 nTPM
FANTOM5:115.3 Scaled Tags Per Million
Pig:125.9 nTPM
Mouse:241.3 nTPM
Allen mouse:13.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 99.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.9
2019 Male, age 18, unknown 85.6
1827 Male, age 72, unknown 82.5
2411 Female, age 72, unknown 81.8
2828 Female, age 72, unknown 77.5
1833 Male, age 53, unknown 75.5
1870 Female, age 42, unknown 70.9
2219 Male, age 76, both hemispheres 69.2
1830 Male, age 51, unknown 65.2
2666 Male, age 74, left hemisphere 44.3
2586 Male, age 75, left hemisphere 26.8
Dorsal raphe nucleus
nTPM: 83.7
2298 Female, age 72, unknown 143.1
2750 Male, age 76, both hemispheres 74.3
1828 Male, age 53, unknown 71.4
2047 Male, age 72, unknown 71.1
2016 Female, age 72, unknown 58.9
Inferior colliculus
nTPM: 81.4
2097 Female, age 72, unknown 98.1
1848 Female, age 42, unknown 83.0
2849 Male, age 72, unknown 72.4
1890 Male, age 53, unknown 71.9
Median raphe nucleus
nTPM: 81.9
2220 Male, age 76, midline 81.9
Periaquaductal grey, anterior
nTPM: 71.6
1947 Male, age 18, unknown 72.6
1795 Male, age 51, unknown 72.1
2502 Female, age 75, unknown 70.2
Periaquaductal grey, dorsal
nTPM: 73.7
2850 Male, age 76, both hemispheres 85.7
1840 Male, age 53, unknown 75.1
1831 Male, age 72, unknown 68.2
2464 Female, age 72, unknown 65.9
Periaquaductal grey, lateral
nTPM: 91.3
2272 Male, age 74, both hemispheres 138.5
2140 Male, age 76, both hemispheres 70.3
2053 Male, age 18, unknown 65.1
Pretectal area
nTPM: 99.3
2273 Male, age 74, both hemispheres 143.5
1944 Female, age 72, unknown 112.7
2007 Male, age 72, unknown 112.5
1817 Female, age 42, unknown 110.4
1816 Male, age 51, unknown 107.1
2224 Female, age 72, unknown 100.4
2667 Female, age 75, unknown 98.5
1815 Male, age 53, unknown 96.3
2407 Male, age 75, both hemispheres 86.5
2825 Male, age 18, unknown 65.3
2316 Male, age 76, right hemisphere 58.8
Red nucleus
nTPM: 65.6
2785 Male, age 18, unknown 82.9
2725 Female, age 75, unknown 80.3
1821 Female, age 72, unknown 76.2
2823 Male, age 76, right hemisphere 74.3
2769 Male, age 72, unknown 68.2
2503 Female, age 72, unknown 65.2
1865 Male, age 51, unknown 62.7
1954 Female, age 42, unknown 61.9
2227 Male, age 72, unknown 58.7
1904 Male, age 53, unknown 55.3
2584 Male, age 75, left hemisphere 53.8
2588 Male, age 74, left hemisphere 48.2
Substantia nigra
nTPM: 75.4
1889 Female, age 72, unknown 100.8
2409 Female, age 72, unknown 93.9
1916 Female, age 42, unknown 88.9
1941 Male, age 53, unknown 88.8
2241 Male, age 72, unknown 76.7
1851 Male, age 51, unknown 74.6
2699 Male, age 18, unknown 69.5
2590 Female, age 75, unknown 67.2
2665 Male, age 74, both hemispheres 50.5
2583 Male, age 75, right hemisphere 42.8
Superior colliculus
nTPM: 70.7
2087 Female, age 72, unknown 110.5
1895 Male, age 76, right hemisphere 84.6
2261 Male, age 18, unknown 80.2
1796 Male, age 53, unknown 79.8
2587 Male, age 74, left hemisphere 73.4
1839 Male, age 51, unknown 69.6
1913 Female, age 42, unknown 64.1
1995 Male, age 72, unknown 60.6
2668 Female, age 75, unknown 58.7
2664 Male, age 75, both hemispheres 25.7
Ventral tegmental area
nTPM: 78.3
2410 Female, age 72, unknown 110.5
2218 Male, age 76, both hemispheres 92.4
1915 Female, age 42, unknown 77.1
1942 Male, age 51, unknown 66.2
2021 Male, age 53, unknown 64.9
2223 Female, age 72, unknown 58.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 61.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.2
Samples: 139

Max nTPM: 103.9
Min nTPM: 36.8
Std nTPM: 13.3
Median nTPM: 60.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 103.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 103.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 102.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 92.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 88.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 88.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 87.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 85.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 83.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 83.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 82.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 115.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.3
FF:10158-103A5 76 years, female 115.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 125.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 110.2
Samples: 4

Max nTPM: 145.1
Min nTPM: 77.2
Sample A Female 145.1
Sample B Female 93.1
Sample C Male 125.4
Sample D Male 77.2
Midbrain
nTPM: 117.3
Samples: 4

Max nTPM: 148.3
Min nTPM: 99.0
Sample A Female 110.2
Sample B Female 99.0
Sample C Male 148.3
Sample D Male 111.6
Periaqueductal gray
nTPM: 78.7
Samples: 3

Max nTPM: 84.7
Min nTPM: 70.9
Sample B Female 80.5
Sample C Male 84.7
Sample D Male 70.9
Superior colliculi
nTPM: 125.9
Samples: 4

Max nTPM: 145.6
Min nTPM: 97.9
Sample A Female 135.5
Sample B Female 124.7
Sample C Male 145.6
Sample D Male 97.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 241.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 241.3
Samples: 4

Max nTPM: 246.5
Min nTPM: 233.2
Sample A Male 239.5
Sample B Male 246.5
Sample C Female 245.9
Sample D Female 233.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.9
69015578 Antisense, RP_050315_01_C06, Mouse strain C57BL/6J (56 days, male) 13.9

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