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TRAK1
HPA
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  • TRAK1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TRAK1
Synonyms KIAA1042, MILT1, OIP106
Gene descriptioni

Full gene name according to HGNC.

Trafficking kinesin protein 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 3
Cytoband p22.1
Chromosome location (bp) 42013802 - 42225890
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000182606 (version 109)
Entrez gene 22906
HGNC HGNC:29947
UniProt Q9UPV9 (UniProt - Evidence at protein level)
neXtProt NX_Q9UPV9
GeneCards TRAK1
Antibodypedia TRAK1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Involved in the regulation of endosome-to-lysosome trafficking, including endocytic trafficking of EGF-EGFR complexes and GABA-A receptors 1. Involved in mitochondrial motility. When O-glycosylated, abolishes mitochondrial motility. Crucial for recruiting OGT to the mitochondrial surface of neuronal processes 2. TRAK1 and RHOT form an essential protein complex that links KIF5 to mitochondria for light chain-independent, anterograde transport of mitochondria (By similarity).... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable GABA receptor binding activity and myosin binding activity. Involved in endosome to lysosome transport. Located in early endosome and mitochondrion. Implicated in developmental and epileptic encephalopathy 68. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TRAK1-201
ENSP00000328998
ENST00000327628
Q9UPV9
[Direct mapping] Trafficking kinesin-binding protein 1
Show all
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Nervous system diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005102 [signaling receptor binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005829 [cytosol]
GO:0005938 [cell cortex]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006493 [protein O-linked glycosylation]
GO:0006605 [protein targeting]
GO:0008333 [endosome to lysosome transport]
GO:0016020 [membrane]
GO:0017022 [myosin binding]
GO:0022008 [neurogenesis]
GO:0030425 [dendrite]
GO:0031410 [cytoplasmic vesicle]
GO:0031966 [mitochondrial membrane]
GO:0047496 [vesicle transport along microtubule]
GO:0048311 [mitochondrion distribution]
GO:0050811 [GABA receptor binding]
GO:0098957 [anterograde axonal transport of mitochondrion]
GO:1904115 [axon cytoplasm]
Show all
953 aa
106 kDa
No 0
TRAK1-202
ENSP00000340702
ENST00000341421
Q9UPV9
[Direct mapping] Trafficking kinesin-binding protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Nervous system diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005102 [signaling receptor binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005829 [cytosol]
GO:0005938 [cell cortex]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006493 [protein O-linked glycosylation]
GO:0006605 [protein targeting]
GO:0008333 [endosome to lysosome transport]
GO:0016020 [membrane]
GO:0017022 [myosin binding]
GO:0022008 [neurogenesis]
GO:0030425 [dendrite]
GO:0031410 [cytoplasmic vesicle]
GO:0031966 [mitochondrial membrane]
GO:0047496 [vesicle transport along microtubule]
GO:0048311 [mitochondrion distribution]
GO:0050811 [GABA receptor binding]
GO:0098957 [anterograde axonal transport of mitochondrion]
GO:1904115 [axon cytoplasm]
Show all
686 aa
77.3 kDa
No 0
TRAK1-203
ENSP00000379478
ENST00000396175
C9JC32
[Direct mapping] Trafficking kinesin-binding protein 1; Trafficking protein, kinesin binding 1, isoform CRA_c
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005739 [mitochondrion]
GO:0005769 [early endosome]
Show all
895 aa
99.7 kDa
No 0
TRAK1-205
ENSP00000413729
ENST00000427771
H7C3T3
[Direct mapping] Trafficking kinesin-binding protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005739 [mitochondrion]
GO:0005769 [early endosome]
Show all
300 aa
33.8 kDa
No 0
TRAK1-206
ENSP00000410717
ENST00000449246
Q9UPV9
[Direct mapping] Trafficking kinesin-binding protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Nervous system diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005102 [signaling receptor binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005829 [cytosol]
GO:0005938 [cell cortex]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006493 [protein O-linked glycosylation]
GO:0006605 [protein targeting]
GO:0008333 [endosome to lysosome transport]
GO:0016020 [membrane]
GO:0017022 [myosin binding]
GO:0022008 [neurogenesis]
GO:0030425 [dendrite]
GO:0031410 [cytoplasmic vesicle]
GO:0031966 [mitochondrial membrane]
GO:0047496 [vesicle transport along microtubule]
GO:0048311 [mitochondrion distribution]
GO:0050811 [GABA receptor binding]
GO:0098957 [anterograde axonal transport of mitochondrion]
GO:1904115 [axon cytoplasm]
Show all
556 aa
63.6 kDa
No 0
TRAK1-208
ENSP00000487488
ENST00000484786
A0A0D9SGH2
[Direct mapping] Trafficking kinesin-binding protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005739 [mitochondrion]
GO:0005769 [early endosome]
Show all
526 aa
60 kDa
No 0
TRAK1-209
ENSP00000486713
ENST00000487159
A0A0D9SFL5
[Direct mapping] Trafficking kinesin-binding protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005739 [mitochondrion]
GO:0005769 [early endosome]
Show all
849 aa
94.2 kDa
No 0
TRAK1-210
ENSP00000483516
ENST00000613405
A0A087X0N0
[Direct mapping] Trafficking kinesin-binding protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005739 [mitochondrion]
GO:0005769 [early endosome]
Show all
670 aa
75.5 kDa
No 0
TRAK1-211
ENSP00000500099
ENST00000672026
A0A5F9ZH95
[Direct mapping] Trafficking kinesin-binding protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005739 [mitochondrion]
GO:0005769 [early endosome]
Show all
608 aa
68.8 kDa
No 0
TRAK1-212
ENSP00000500819
ENST00000673621
A0A5F9ZI06
[Direct mapping] Trafficking kinesin-binding protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005739 [mitochondrion]
GO:0005769 [early endosome]
Show all
981 aa
109 kDa
No 0

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