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COL18A1
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  • COL18A1
TISSUE PRIMARY DATA OVARY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Ovary
Tissue proteome
Ovary
OVARY - Expression summary
Protein expression
Ovaryi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Follicle cells: Low
Ovarian stroma cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:249.1 nTPM
HPA:78.3 nTPM
GTEx:249.1 nTPM
FANTOM5:199.7 Scaled Tags Per Million

OVARY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA030933
Follicle cells Low
Ovarian stroma cells High



OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.3
overview
Female, age 64
Ovary sample 192
nTPM: 96.8
Cell types%
Stromal cells:
70

Smooth muscle cells:
15

Other cell types:
15

overview
Female, age 52
Ovary sample 193
nTPM: 63.5
Cell types%
Stromal cells:
95

Other cell types:
5

overview
Female, age 80
Ovary sample 308
nTPM: 30.3
Cell types%
Stromal cells:
70

Smooth muscle cells:
25

Other cell types:
5

N/A
Female, age 7
Ovary sample 3662
nTPM: 62.2
N/A
Female, age 16
Ovary sample 3663
nTPM: 48.3
N/A
Female, age 20
Ovary sample 3664
nTPM: 105.7
N/A
Female, age 32
Ovary sample 3665
nTPM: 141.3

OVARY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.1
GTEx sample id Sample description nTPM
Ovary
Average nTPM: 249.1
Samples: 180

Max nTPM: 635.6
Min nTPM: 87.2
Std nTPM: 90.3
Median nTPM: 239.0
GTEX-15EOM-1526-SM-68723 20-29 years, female 635.6
GTEX-1RDX4-0826-SM-E9TK7 50-59 years, female 528.5
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 522.2
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 520.3
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 514.1
GTEX-145MI-2626-SM-5QGQ8 60-69 years, female 480.7
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 476.5
GTEX-1F5PL-1626-SM-7MXTY 40-49 years, female 436.3
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 419.7
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 418.0
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 417.8
GTEX-18A7A-2626-SM-7LG6L 50-59 years, female 400.3
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 399.4
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 387.6
GTEX-QVJO-3126-SM-COH22 60-69 years, female 371.9
GTEX-1C475-0426-SM-7P8OU 40-49 years, female 368.7
GTEX-1LNCM-0926-SM-DHXK5 50-59 years, female 365.8
GTEX-1K9T9-2426-SM-DHXKT 50-59 years, female 361.2
GTEX-1JN1M-2126-SM-D4P2X 60-69 years, female 356.3
GTEX-145LS-2326-SM-5TDCY 60-69 years, female 354.5
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 354.3
GTEX-16MT8-2226-SM-6LPK2 60-69 years, female 348.5
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 346.5
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 343.4
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 343.2
GTEX-11I78-1926-SM-59878 50-59 years, female 328.7
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 322.6
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 320.4
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 320.4
GTEX-1F88E-2026-SM-7MXVP 60-69 years, female 317.6
GTEX-WYBS-2426-SM-4ONDI 60-69 years, female 314.6
GTEX-14PKU-1226-SM-686ZM 40-49 years, female 314.5
GTEX-1PBJI-2026-SM-DPRYF 20-29 years, female 314.5
GTEX-1MA7W-1426-SM-EV7A1 20-29 years, female 310.4
GTEX-1B933-2126-SM-7MGXR 50-59 years, female 309.7
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 305.3
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 303.8
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 302.0
GTEX-15FZZ-0826-SM-6LLJO 30-39 years, female 299.2
GTEX-S341-0726-SM-4AD5R 40-49 years, female 299.1
GTEX-WI4N-2526-SM-4OOSE 40-49 years, female 297.8
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 297.7
GTEX-1I4MK-1526-SM-CE6T1 50-59 years, female 295.5
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 290.0
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 286.0
GTEX-1EWIQ-2226-SM-7MGXJ 70-79 years, female 285.9
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 282.7
GTEX-1QPFJ-1726-SM-EXOJU 30-39 years, female 282.7
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 281.3
GTEX-S32W-1226-SM-4AD67 50-59 years, female 279.1
GTEX-16NGA-0426-SM-7LG6K 40-49 years, female 278.2
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 278.1
GTEX-1ICG6-1526-SM-C1YQT 70-79 years, female 277.6
GTEX-1LGOU-1026-SM-DHXL4 20-29 years, female 277.5
GTEX-15DDE-2326-SM-6AJA8 50-59 years, female 274.1
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 273.7
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 270.6
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 269.6
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 266.6
GTEX-1QEPI-2726-SM-DPRZ6 60-69 years, female 266.6
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 266.5
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 266.0
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 264.4
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 263.5
GTEX-1IDJE-1126-SM-A96SO 50-59 years, female 262.1
GTEX-QCQG-1426-SM-48U22 50-59 years, female 260.6
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 258.4
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 257.6
GTEX-1GN1W-1426-SM-9JGHP 50-59 years, female 257.6
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 257.0
GTEX-1J8JJ-0826-SM-AHZ3F 60-69 years, female 255.6
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 254.3
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 254.2
GTEX-1R9PN-0626-SM-E6CR9 40-49 years, female 253.4
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 251.5
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 251.3
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 248.9
GTEX-14DAQ-2226-SM-5YYAD 60-69 years, female 247.6
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 247.1
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 246.7
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 245.5
GTEX-1A32A-2726-SM-73KVU 50-59 years, female 245.3
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 244.3
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 244.3
GTEX-14BIN-1426-SM-664NI 50-59 years, female 243.3
GTEX-145ME-1226-SM-5SIB6 40-49 years, female 242.7
GTEX-WXYG-1426-SM-4ONCK 50-59 years, female 242.4
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 241.7
GTEX-1HSGN-2426-SM-C1YRI 40-49 years, female 240.0
GTEX-1QP28-1326-SM-DPRXZ 50-59 years, female 239.6
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 238.4
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 238.1
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 237.3
GTEX-1F6RS-2726-SM-7MKHA 60-69 years, female 237.2
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 236.3
GTEX-14PN3-1526-SM-6ETZM 60-69 years, female 235.4
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 234.9
GTEX-14PKV-1226-SM-6871T 20-29 years, female 234.5
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 233.5
GTEX-1LVAM-1826-SM-DHXKR 50-59 years, female 230.2
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 228.7
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 228.7
GTEX-14PJM-2426-SM-686ZC 50-59 years, female 227.5
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 226.3
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 223.6
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 222.7
GTEX-R55G-1526-SM-48FER 40-49 years, female 221.9
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 220.5
GTEX-13SLX-2426-SM-664OM 50-59 years, female 218.4
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 218.3
GTEX-1OJC4-2026-SM-E6CQW 50-59 years, female 218.0
GTEX-1J1OQ-1626-SM-CE6TB 40-49 years, female 217.6
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 216.4
GTEX-1HBPH-2726-SM-A96TW 40-49 years, female 216.0
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 215.9
GTEX-1F52S-2226-SM-7MXVE 60-69 years, female 215.5
GTEX-17JCI-2326-SM-7IGPC 60-69 years, female 214.7
GTEX-1F48J-2326-SM-7MKG3 50-59 years, female 214.6
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 214.5
GTEX-15ER7-2326-SM-7KUN3 20-29 years, female 212.5
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 211.0
GTEX-SN8G-2426-SM-EVR31 50-59 years, female 206.0
GTEX-1MCC2-1026-SM-EVR5I 30-39 years, female 203.8
GTEX-1399U-1726-SM-5P9J4 50-59 years, female 203.0
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 200.2
GTEX-1AMFI-1426-SM-731EL 50-59 years, female 200.0
GTEX-1IKOE-2326-SM-A8N99 30-39 years, female 199.8
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 199.4
GTEX-1KANC-1026-SM-D3LAA 50-59 years, female 195.9
GTEX-1H1CY-1926-SM-9WG7X 60-69 years, female 195.3
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 194.7
GTEX-1CAMS-2126-SM-7MXTF 40-49 years, female 194.2
GTEX-RU72-2226-SM-46MUE 50-59 years, female 192.9
GTEX-1S5ZU-2326-SM-EAZ5B 20-29 years, female 192.7
GTEX-14JG6-0626-SM-68716 30-39 years, female 191.3
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 189.8
GTEX-15SDE-0926-SM-6LPIA 50-59 years, female 187.7
GTEX-183WM-1926-SM-72D5F 70-79 years, female 187.1
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 183.9
GTEX-1PIEJ-1626-SM-E6CP9 20-29 years, female 182.3
GTEX-QDT8-2226-SM-EZ6LT 30-39 years, female 181.3
GTEX-1AMEY-0926-SM-72D6G 30-39 years, female 180.8
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 180.4
GTEX-15DYW-2626-SM-6LPK7 60-69 years, female 175.1
GTEX-WYVS-1526-SM-4OND4 40-49 years, female 172.5
GTEX-1IDJU-1126-SM-A9G2S 60-69 years, female 172.1
GTEX-1GN1U-2326-SM-9MQK4 50-59 years, female 171.1
GTEX-13X6H-1026-SM-5SIBE 50-59 years, female 169.0
GTEX-ZV6S-1426-SM-59HKX 40-49 years, female 165.7
GTEX-1LKK1-1626-SM-EVR4Y 50-59 years, female 164.0
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 163.2
GTEX-P78B-1926-SM-3P616 40-49 years, female 163.1
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 161.2
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 160.9
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 159.8
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 159.8
GTEX-1399S-2126-SM-5J2MH 30-39 years, female 154.0
GTEX-1JN76-1426-SM-AHZ4F 20-29 years, female 151.6
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 150.3
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 150.1
GTEX-1A8FM-2226-SM-7PC1C 50-59 years, female 149.1
GTEX-1LGRB-2326-SM-CNNPU 50-59 years, female 146.7
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 145.3
GTEX-14BMU-1726-SM-5TDE8 20-29 years, female 144.7
GTEX-1QP67-1526-SM-E76P4 40-49 years, female 142.4
GTEX-1HCUA-1326-SM-9WPP6 50-59 years, female 141.7
GTEX-1H2FU-2326-SM-9WG7R 60-69 years, female 141.1
GTEX-WEY5-0626-SM-4LMIA 40-49 years, female 138.7
GTEX-15UF6-2026-SM-6LPI3 70-79 years, female 132.5
GTEX-18D9A-0826-SM-718C1 30-39 years, female 131.1
GTEX-1LVAN-2726-SM-CNPQG 50-59 years, female 130.1
GTEX-Q734-0726-SM-48TZP 40-49 years, female 129.0
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 127.4
GTEX-131XG-1926-SM-5LZVG 50-59 years, female 127.0
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 125.9
GTEX-1F88F-2126-SM-9KNUK 60-69 years, female 122.4
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 109.3
GTEX-1GZHY-2426-SM-9JGGK 50-59 years, female 99.9
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 89.2
GTEX-1GF9X-2426-SM-7SB7W 40-49 years, female 87.2
Show allShow less

OVARY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

199.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Ovary
Scaled Tags Per Million: 199.7
FF:10020-101D2 47,75,84 years, female 199.7

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