MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:661.8 nTPM
HPA Brain:153.8 nTPM
GTEx:661.8 nTPM
FANTOM5:71.0 Scaled Tags Per Million
Pig:273.8 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 153.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.4
1870 Female, age 42, unknown 157.2
2828 Female, age 72, unknown 133.4
2586 Male, age 75, left hemisphere 131.4
2666 Male, age 74, left hemisphere 131.1
1827 Male, age 72, unknown 127.5
2411 Female, age 72, unknown 122.7
1833 Male, age 53, unknown 116.5
2019 Male, age 18, unknown 114.7
2219 Male, age 76, both hemispheres 110.3
1830 Male, age 51, unknown 109.1
Dorsal raphe nucleus
nTPM: 141.2
2298 Female, age 72, unknown 174.5
2016 Female, age 72, unknown 142.3
1828 Male, age 53, unknown 135.7
2047 Male, age 72, unknown 127.5
2750 Male, age 76, both hemispheres 126.0
Inferior colliculus
nTPM: 137.7
2097 Female, age 72, unknown 153.5
1890 Male, age 53, unknown 147.8
2849 Male, age 72, unknown 128.5
1848 Female, age 42, unknown 121.1
Median raphe nucleus
nTPM: 133.4
2220 Male, age 76, midline 133.4
Periaquaductal grey, anterior
nTPM: 142.5
2502 Female, age 75, unknown 152.8
1947 Male, age 18, unknown 140.6
1795 Male, age 51, unknown 134.0
Periaquaductal grey, dorsal
nTPM: 129.3
1840 Male, age 53, unknown 149.8
2850 Male, age 76, both hemispheres 140.2
1831 Male, age 72, unknown 124.2
2464 Female, age 72, unknown 103.0
Periaquaductal grey, lateral
nTPM: 120.2
2053 Male, age 18, unknown 138.7
2140 Male, age 76, both hemispheres 121.7
2272 Male, age 74, both hemispheres 100.1
Pretectal area
nTPM: 131.7
1817 Female, age 42, unknown 144.7
2224 Female, age 72, unknown 143.0
1944 Female, age 72, unknown 141.5
2007 Male, age 72, unknown 141.1
2316 Male, age 76, right hemisphere 136.8
1816 Male, age 51, unknown 136.4
1815 Male, age 53, unknown 132.6
2667 Female, age 75, unknown 130.3
2825 Male, age 18, unknown 128.4
2407 Male, age 75, both hemispheres 108.6
2273 Male, age 74, both hemispheres 105.8
Red nucleus
nTPM: 142.4
2503 Female, age 72, unknown 173.2
1821 Female, age 72, unknown 161.7
1865 Male, age 51, unknown 158.0
2725 Female, age 75, unknown 154.4
2227 Male, age 72, unknown 142.5
2584 Male, age 75, left hemisphere 138.4
1904 Male, age 53, unknown 138.2
2769 Male, age 72, unknown 132.8
1954 Female, age 42, unknown 129.7
2823 Male, age 76, right hemisphere 128.5
2785 Male, age 18, unknown 127.1
2588 Male, age 74, left hemisphere 123.8
Substantia nigra
nTPM: 153.8
1851 Male, age 51, unknown 192.0
2699 Male, age 18, unknown 172.8
1916 Female, age 42, unknown 167.1
2241 Male, age 72, unknown 166.0
2665 Male, age 74, both hemispheres 164.9
2409 Female, age 72, unknown 160.7
1889 Female, age 72, unknown 155.2
2590 Female, age 75, unknown 128.0
1941 Male, age 53, unknown 127.9
2583 Male, age 75, right hemisphere 103.2
Superior colliculus
nTPM: 136.6
2587 Male, age 74, left hemisphere 172.3
1913 Female, age 42, unknown 146.7
1995 Male, age 72, unknown 144.3
1796 Male, age 53, unknown 139.6
2668 Female, age 75, unknown 138.2
1895 Male, age 76, right hemisphere 134.7
2261 Male, age 18, unknown 127.8
2087 Female, age 72, unknown 126.8
1839 Male, age 51, unknown 121.6
2664 Male, age 75, both hemispheres 114.3
Ventral tegmental area
nTPM: 143.7
1915 Female, age 42, unknown 170.3
2223 Female, age 72, unknown 160.7
2021 Male, age 53, unknown 146.2
1942 Male, age 51, unknown 131.3
2410 Female, age 72, unknown 129.7
2218 Male, age 76, both hemispheres 123.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 661.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 661.8
Samples: 139

Max nTPM: 1970.8
Min nTPM: 262.5
Std nTPM: 249.4
Median nTPM: 607.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1970.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1631.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1494.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1295.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1264.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1205.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1079.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1034.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1015.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 999.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 988.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.0
FF:10158-103A5 76 years, female 71.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 273.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 273.8
Samples: 4

Max nTPM: 380.4
Min nTPM: 194.6
Sample A Female 380.4
Sample B Female 318.7
Sample C Male 201.6
Sample D Male 194.6
Midbrain
nTPM: 254.5
Samples: 4

Max nTPM: 352.9
Min nTPM: 165.2
Sample A Female 352.9
Sample B Female 275.7
Sample C Male 224.3
Sample D Male 165.2
Periaqueductal gray
nTPM: 196.9
Samples: 3

Max nTPM: 212.9
Min nTPM: 171.8
Sample B Female 212.9
Sample C Male 206.1
Sample D Male 171.8
Superior colliculi
nTPM: 273.4
Samples: 4

Max nTPM: 325.7
Min nTPM: 201.4
Sample A Female 313.2
Sample B Female 325.7
Sample C Male 253.1
Sample D Male 201.4

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