BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:120.4 nTPM
HPA Brain:109.0 nTPM
GTEx:120.4 nTPM
FANTOM5:88.9 Scaled Tags Per Million
Mouse:90.2 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 109.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 87.2
2481 Female, age 94, left hemisphere 124.6
1854 Male, age 80, left hemisphere 99.6
2289 Male, age 61, right hemisphere 99.1
2288 Male, age 75, left hemisphere 88.9
1857 Female, age 85, left hemisphere 87.8
2290 Female, age 72, unknown 74.4
1781 Male, age 74, unknown 62.8
2846 Female, age 79, unknown 60.6
Globus pallidus, externus
nTPM: 109.0
2646 Male, age 61, right hemisphere 177.0
1996 Male, age 80, right hemisphere 123.5
2567 Female, age 72, unknown 104.1
2772 Female, age 79, unknown 80.8
2395 Male, age 75, both hemispheres 59.4
Globus pallidus, internus
nTPM: 98.4
2483 Female, age 94, right hemisphere 113.8
2037 Male, age 80, right hemisphere 113.1
1818 Male, age 74, unknown 112.8
2287 Male, age 75, right hemisphere 97.9
2111 Female, age 85, right hemisphere 89.4
2566 Female, age 72, unknown 85.6
2778 Female, age 91, both hemispheres 76.2
Nucleus accumbens
nTPM: 70.9
2286 Male, age 75, left hemisphere 95.6
2391 Female, age 94, left hemisphere 78.3
1806 Female, age 85, left hemisphere 73.2
2824 Male, age 61, right hemisphere 70.3
2732 Male, age 80, right hemisphere 68.8
1783 Male, age 74, unknown 65.8
1856 Female, age 91, right hemisphere 59.2
2698 Female, age 72, unknown 55.7
Nucleus basalis of Meynert
nTPM: 95.0
2569 Male, age 61, both hemispheres 192.7
2484 Female, age 94, left hemisphere 69.5
2393 Male, age 80, right hemisphere 68.1
2821 Male, age 75, both hemispheres 49.7
Nucleus of the diagonal band
nTPM: 63.8
1979 Male, age 74, unknown 72.8
2775 Male, age 80, right hemisphere 70.8
2195 Female, age 85, both hemispheres 62.8
1812 Female, age 91, both hemispheres 59.6
2029 Male, age 61, right hemisphere 53.1
Putamen
nTPM: 78.0
2647 Male, age 75, left hemisphere 106.2
2482 Female, age 94, left hemisphere 93.5
2489 Female, age 72, unknown 90.3
1838 Male, age 80, right hemisphere 69.8
1829 Male, age 74, unknown 67.2
2466 Female, age 79, unknown 64.6
1937 Female, age 91, right hemisphere 54.2
Septal nuclei
nTPM: 66.6
2059 Female, age 85, both hemispheres 99.6
2199 Male, age 80, right hemisphere 77.4
1960 Male, age 74, unknown 70.2
2394 Male, age 61, left hemisphere 60.3
2629 Female, age 94, right hemisphere 53.6
2031 Female, age 72, unknown 53.3
2009 Female, age 91, both hemispheres 51.7
Stria terminalis, bed nucleus
nTPM: 57.7
2201 Male, age 74, unknown 72.3
2486 Female, age 94, both hemispheres 51.8
1974 Female, age 91, both hemispheres 49.2

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 120.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 113.2
Samples: 246

Max nTPM: 307.6
Min nTPM: 21.0
Std nTPM: 51.1
Median nTPM: 101.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 307.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 266.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 251.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 245.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 244.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 244.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 241.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 240.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 236.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 231.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 221.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 94.6
Samples: 246

Max nTPM: 323.0
Min nTPM: 19.4
Std nTPM: 46.4
Median nTPM: 85.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 323.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 318.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 240.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 206.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 205.0
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 204.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 200.3
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 200.0
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 196.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 192.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 186.0
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Brain - Putamen (basal ganglia)
Average nTPM: 120.4
Samples: 205

Max nTPM: 303.4
Min nTPM: 17.4
Std nTPM: 56.8
Median nTPM: 109.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 303.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 296.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 295.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 284.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 276.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 249.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 237.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 227.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 221.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 221.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 217.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 88.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 88.9
FF:10164-103B2 76 years, female 88.9
Nucleus accumbens
Scaled Tags Per Million: 76.0
FF:10037-101F1 23-56 years, mixed 76.0
Putamen
Scaled Tags Per Million: 69.1
FF:10176-103C5 60 years, female 69.1
Globus pallidus
Scaled Tags Per Million: 68.5
FF:10161-103A8 76 years, female 78.2
FF:10175-103C4 60 years, female 58.8

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 90.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 24.7
Samples: 4

Max nTPM: 27.3
Min nTPM: 20.7
Sample A Male 20.7
Sample B Male 27.3
Sample C Female 27.2
Sample D Female 23.4
Septum
nTPM: 90.2
Samples: 4

Max nTPM: 97.5
Min nTPM: 78.3
Sample A Male 91.8
Sample B Male 97.5
Sample C Female 93.2
Sample D Female 78.3
Ventral forebrain
nTPM: 62.5
Samples: 4

Max nTPM: 70.3
Min nTPM: 57.9
Sample A Male 59.3
Sample B Male 70.3
Sample C Female 62.6
Sample D Female 57.9

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
71210908 Antisense, RP_050810_04_G08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
71210908 Antisense, RP_050810_04_G08, Mouse strain C57BL/6J (56 days, male) 0.0

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