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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:278.9 nTPM
GTEx:278.9 nTPM
FANTOM5:233.3 Scaled Tags Per Million
Pig:127.8 nTPM
Mouse:220.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

278.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 278.9
Samples: 105

Max nTPM: 528.4
Min nTPM: 167.9
Std nTPM: 58.7
Median nTPM:
495_1 57 years, female 528.4
35_1 74 years, female 404.6
405_1 91 years, male 392.8
518_1 75 years, female 390.5
142_1 61 years, female 376.0
43_1 64 years, female 375.1
322_1 76 years, male 371.1
139_1 64 years, female 364.4
6_1 73 years, female 363.5
217_1 76 years, male 351.4
149_1 88 years, male 350.9
413_1 59 years, female 348.2
153_1 70 years, female 347.2
81_1 67 years, male 342.2
414_1 84 years, female 342.0
415_1 77 years, female 341.1
491_1 89 years, female 336.4
501_1 88 years, male 336.4
466_1 57 years, female 336.1
406_1 79 years, male 335.3
389_1 86 years, female 334.9
526_1 61 years, male 324.9
375_1 74 years, female 321.1
4_1 88 years, female 320.8
137_1 83 years, male 319.0
189_1 76 years, male 316.7
318_1 68 years, male 316.3
316_1 62 years, male 315.5
32_1 67 years, male 315.3
324_1 76 years, male 308.1
218_1 71 years, female 307.3
18_1 88 years, male 307.0
17_1 71 years, male 304.7
126_1 63 years, male 303.1
251_1 78 years, male 298.4
291_1 76 years, male 294.5
468_1 89 years, male 293.9
447_1 81 years, male 293.4
288_1 66 years, female 292.7
145_1 84 years, male 291.9
321_1 62 years, female 291.8
177_1 74 years, male 289.3
490_1 67 years, female 289.3
377_1 82 years, female 287.8
404_1 82 years, female 285.9
307_1 66 years, female 282.5
172_1 72 years, female 281.1
480_1 63 years, male 281.0
229_1 69 years, female 279.0
320_1 89 years, female 276.7
117_1 61 years, male 276.1
319_1 81 years, male 273.2
2_1 77 years, female 270.9
120_1 70 years, female 268.5
162_1 79 years, female 268.2
386_1 76 years, male 267.0
425_1 59 years, female 266.1
348_1 84 years, male 266.0
266_1 85 years, male 264.7
379_1 60 years, male 264.1
503_1 68 years, male 263.1
314_1 67 years, male 262.2
499_1 55 years, female 260.6
315_1 62 years, female 260.1
396_1 62 years, male 256.0
265_1 87 years, male 255.9
173_1 67 years, male 255.5
347_1 72 years, male 255.0
254_1 77 years, female 254.9
89_1 63 years, male 254.1
517_1 88 years, male 252.0
163_1 78 years, male 251.0
311_1 78 years, male 248.3
376_1 75 years, female 247.8
237_1 82 years, male 247.1
246_1 77 years, male 246.7
335_1 73 years, female 244.7
352_1 62 years, male 241.5
354_1 81 years, female 240.2
264_1 73 years, female 239.3
308_1 70 years, female 238.8
353_1 82 years, female 238.1
355_1 70 years, female 232.3
350_1 84 years, female 225.8
42_1 85 years, male 223.6
452_1 88 years, female 222.7
384_1 83 years, male 222.0
351_1 91 years, male 221.2
295_1 61 years, female 220.1
115_1 83 years, male 220.0
317_1 60 years, male 216.3
119_1 70 years, female 212.4
9_1 66 years, female 211.1
109_1 81 years, female 210.3
292_1 71 years, male 208.1
313_1 79 years, female 206.5
286_1 68 years, female 204.9
243_1 75 years, male 204.1
506_1 65 years, male 191.6
41_1 94 years, female 187.3
293_1 68 years, female 186.1
394_1 75 years, female 181.9
99_1 64 years, male 178.9
349_1 83 years, male 175.6
356_1 87 years, female 167.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

233.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 233.3
FF:10030-101E3 24-65 years, mixed 233.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.8
Pig sample Sample description nTPM
Retina
nTPM: 127.8
Samples: 4

Max nTPM: 136.5
Min nTPM: 119.3
Sample A Female 119.3
Sample B Female 127.8
Sample C Male 136.5
Sample D Male 127.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.6
Mouse sample Sample description nTPM
Retina
nTPM: 220.6
Samples: 4

Max nTPM: 265.6
Min nTPM: 189.3
Sample A Male 265.6
Sample B Male 189.3
Sample C Female 189.5
Sample D Female 237.8

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