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BRAIN HIPPOCAMPUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

123.172
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:58.0 nTPM
GTEx:76.6 nTPM
FANTOM5:74.5 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA005792
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA005792
Hippocampal formation mean intensity 123.172
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 65.049
Molecular layer of the dentate gyrus 72.287
Granular dentate gyrus 123.172
CA1 - oriens layer 59.858
CA1 - pyramidal layer 39.002
CA1 - radiatum layer 34.033
CA2 - oriens layer 69.019
CA2 - pyramidal layer 99.747
CA2 - radiatum layer 82.428
CA3 - oriens layer 38.081
CA3 - pyramidal layer 32.411
CA3 - radiatum layer 37.983
Stratum lucidum 95.508
Lacunosum moleculare 37.075
Subiculum 24.389

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.0
Sample id Sample description nTPM
Hippocampus
nTPM: 58.0
2148 Female, age 91, left hemisphere 94.6
1898 Male, age 80, left hemisphere 69.4
2529 Female, age 94, left hemisphere 52.3
1911 Female, age 85, right hemisphere 49.4
2621 Female, age 67, right hemisphere 47.1
1855 Male, age 76, left hemisphere 35.4

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 76.6
Samples: 197

Max nTPM: 623.8
Min nTPM: 8.7
Std nTPM: 91.2
Median nTPM: 43.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 623.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 585.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 412.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 405.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 364.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 351.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 340.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 298.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 293.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 264.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 231.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 217.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 206.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 203.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 201.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 196.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 196.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 187.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 178.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 173.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 171.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 167.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 162.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 155.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 155.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 149.7
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 136.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 130.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 130.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 126.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 123.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 117.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 116.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 115.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 114.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 113.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 110.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 108.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 105.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 103.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 101.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 100.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 100.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 99.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 98.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 94.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 93.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 92.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 92.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 90.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 90.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 88.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 78.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 78.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 78.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 76.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 73.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 72.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 72.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 72.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 70.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 70.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 68.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 68.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 67.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 67.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 67.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 67.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 65.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 64.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 63.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 63.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 63.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 62.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 61.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 61.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 59.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 58.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 57.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 57.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 56.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 56.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 56.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 53.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 53.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 53.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 52.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 51.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 50.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 49.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 48.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 48.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 46.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 46.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 46.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 45.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 45.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 44.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 43.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 43.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 43.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 43.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 43.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 43.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 43.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 42.6
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 42.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 42.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 42.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 41.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 40.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 39.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 39.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 38.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 38.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 38.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 38.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 37.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 37.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 37.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 37.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 36.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 35.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 35.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 34.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 32.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 32.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 30.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 30.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 30.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 29.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 29.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 29.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 29.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 28.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 28.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 28.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 28.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 28.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 28.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 28.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 27.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 27.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 27.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 26.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 26.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 26.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 26.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 25.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 25.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 25.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 25.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 24.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 24.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 23.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 23.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 23.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 22.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 22.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 22.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 21.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 21.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 21.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 21.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 20.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 19.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 19.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 19.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 18.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 18.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 18.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 18.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 18.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 17.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 17.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 17.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 17.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 16.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 16.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 16.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 14.9
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 14.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 14.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 13.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 13.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 13.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 13.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 12.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 12.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 12.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 12.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 12.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 11.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 11.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 10.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 10.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 8.7
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

74.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 74.5
FF:10169-103B7 60 years, female 84.1
FF:10153-102I9 76 years, female 65.0

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The Human Protein Atlas

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


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