MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:111.6 nTPM
HPA Brain:586.7 nTPM
GTEx:111.6 nTPM
FANTOM5:43.1 Scaled Tags Per Million
Pig:1828.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 586.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 122.7
2019 Male, age 18, unknown 413.3
1827 Male, age 72, unknown 301.2
2828 Female, age 72, unknown 174.2
2219 Male, age 76, both hemispheres 80.8
1870 Female, age 42, unknown 57.7
2411 Female, age 72, unknown 50.8
2586 Male, age 75, left hemisphere 46.9
2666 Male, age 74, left hemisphere 43.9
1830 Male, age 51, unknown 30.0
1833 Male, age 53, unknown 28.1
Dorsal raphe nucleus
nTPM: 23.9
2298 Female, age 72, unknown 48.0
2750 Male, age 76, both hemispheres 27.2
1828 Male, age 53, unknown 24.6
2016 Female, age 72, unknown 13.0
2047 Male, age 72, unknown 6.5
Inferior colliculus
nTPM: 144.8
2097 Female, age 72, unknown 289.4
1890 Male, age 53, unknown 189.6
1848 Female, age 42, unknown 62.9
2849 Male, age 72, unknown 37.1
Median raphe nucleus
nTPM: 10.1
2220 Male, age 76, midline 10.1
Periaquaductal grey, anterior
nTPM: 101.3
1795 Male, age 51, unknown 238.2
2502 Female, age 75, unknown 59.7
1947 Male, age 18, unknown 5.8
Periaquaductal grey, dorsal
nTPM: 110.6
1831 Male, age 72, unknown 301.0
2464 Female, age 72, unknown 53.7
2850 Male, age 76, both hemispheres 44.7
1840 Male, age 53, unknown 43.0
Periaquaductal grey, lateral
nTPM: 82.5
2053 Male, age 18, unknown 128.1
2272 Male, age 74, both hemispheres 73.9
2140 Male, age 76, both hemispheres 45.3
Pretectal area
nTPM: 586.7
1815 Male, age 53, unknown 1264.9
1816 Male, age 51, unknown 1254.4
1817 Female, age 42, unknown 1249.9
1944 Female, age 72, unknown 1087.6
2007 Male, age 72, unknown 919.4
2667 Female, age 75, unknown 275.7
2273 Male, age 74, both hemispheres 142.4
2407 Male, age 75, both hemispheres 89.5
2224 Female, age 72, unknown 58.2
2316 Male, age 76, right hemisphere 57.0
2825 Male, age 18, unknown 54.8
Red nucleus
nTPM: 82.8
2785 Male, age 18, unknown 413.7
2584 Male, age 75, left hemisphere 87.6
2588 Male, age 74, left hemisphere 76.4
2503 Female, age 72, unknown 68.0
2823 Male, age 76, right hemisphere 66.7
2725 Female, age 75, unknown 56.3
1904 Male, age 53, unknown 49.8
1821 Female, age 72, unknown 45.8
1954 Female, age 42, unknown 45.3
1865 Male, age 51, unknown 39.6
2769 Male, age 72, unknown 22.4
2227 Male, age 72, unknown 22.3
Substantia nigra
nTPM: 117.6
1889 Female, age 72, unknown 596.2
2665 Male, age 74, both hemispheres 196.6
2409 Female, age 72, unknown 89.2
1916 Female, age 42, unknown 49.6
2583 Male, age 75, right hemisphere 49.2
2590 Female, age 75, unknown 47.5
1851 Male, age 51, unknown 43.1
2241 Male, age 72, unknown 41.6
1941 Male, age 53, unknown 38.6
2699 Male, age 18, unknown 24.8
Superior colliculus
nTPM: 282.1
2087 Female, age 72, unknown 764.6
1913 Female, age 42, unknown 521.7
1995 Male, age 72, unknown 345.6
1796 Male, age 53, unknown 325.9
2261 Male, age 18, unknown 312.8
2668 Female, age 75, unknown 240.1
1895 Male, age 76, right hemisphere 97.6
2664 Male, age 75, both hemispheres 88.4
2587 Male, age 74, left hemisphere 75.5
1839 Male, age 51, unknown 48.6
Ventral tegmental area
nTPM: 34.5
2410 Female, age 72, unknown 48.6
2218 Male, age 76, both hemispheres 46.9
1942 Male, age 51, unknown 35.6
1915 Female, age 42, unknown 34.9
2223 Female, age 72, unknown 20.8
2021 Male, age 53, unknown 20.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 111.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.6
Samples: 139

Max nTPM: 677.2
Min nTPM: 7.6
Std nTPM: 97.8
Median nTPM: 82.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 677.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 509.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 422.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 407.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 298.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 298.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 294.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 274.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 262.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 258.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 250.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.1
FF:10158-103A5 76 years, female 43.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1828.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 356.7
Samples: 4

Max nTPM: 565.7
Min nTPM: 198.6
Sample A Female 401.9
Sample B Female 260.6
Sample C Male 565.7
Sample D Male 198.6
Midbrain
nTPM: 1382.7
Samples: 4

Max nTPM: 4993.2
Min nTPM: 151.1
Sample A Female 151.1
Sample B Female 188.0
Sample C Male 4993.2
Sample D Male 198.5
Periaqueductal gray
nTPM: 138.1
Samples: 3

Max nTPM: 168.1
Min nTPM: 104.3
Sample B Female 104.3
Sample C Male 168.1
Sample D Male 141.9
Superior colliculi
nTPM: 1828.8
Samples: 4

Max nTPM: 4181.0
Min nTPM: 352.4
Sample A Female 352.4
Sample B Female 1414.6
Sample C Male 4181.0
Sample D Male 1367.2

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