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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:1486.3 nTPM
FANTOM5:1662.8 Scaled Tags Per Million
Pig:1572.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA005792
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1486.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1486.3
Samples: 246

Max nTPM: 5186.4
Min nTPM: 119.1
Std nTPM: 955.0
Median nTPM: 1354.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 5186.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 4526.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 4381.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3784.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 3698.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 3583.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 3543.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3425.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3369.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 3341.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 3265.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 3193.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 3176.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 3138.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 3022.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 2979.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2972.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2968.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2965.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 2958.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2917.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2861.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 2846.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 2829.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2788.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2736.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 2691.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 2687.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2663.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2659.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 2644.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 2634.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2618.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2605.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 2600.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2515.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2478.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 2465.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2429.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 2423.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2401.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 2369.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 2366.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2359.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2323.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2321.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2310.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2272.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 2259.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 2257.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2233.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2224.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2191.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2177.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2163.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2160.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 2149.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2143.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 2105.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2091.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 2077.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 2059.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2059.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2057.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2056.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 2047.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2023.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2009.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2007.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2001.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1991.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1970.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1959.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1932.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1929.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1909.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1899.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1898.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1888.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1873.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1851.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1844.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1834.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1822.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1821.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1812.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1801.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1794.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1792.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1789.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1788.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1767.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1764.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1764.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1747.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1738.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1732.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1723.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1723.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1714.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1701.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1700.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1690.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1659.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1651.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1640.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1617.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1598.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1573.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1573.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1568.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1545.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1539.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1538.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1506.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1486.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1474.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1471.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1465.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1424.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1418.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1401.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1356.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1353.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1345.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1336.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1328.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1318.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1292.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1278.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1275.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1274.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1272.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1265.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1262.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1262.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1227.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1225.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1221.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1220.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1206.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1201.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1194.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1193.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1188.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1167.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1133.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1106.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1106.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1075.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1057.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1047.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1039.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1034.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1029.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1029.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1026.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1026.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1024.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1015.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 985.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 959.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 941.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 935.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 911.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 907.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 889.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 886.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 884.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 883.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 867.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 861.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 843.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 835.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 828.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 820.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 811.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 805.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 800.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 782.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 773.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 754.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 752.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 747.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 738.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 716.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 668.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 665.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 653.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 630.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 613.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 601.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 590.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 587.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 577.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 562.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 524.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 511.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 505.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 492.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 452.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 450.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 444.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 431.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 418.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 408.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 407.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 394.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 382.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 380.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 374.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 366.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 350.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 346.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 343.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 332.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 323.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 321.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 320.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 318.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 308.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 304.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 298.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 289.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 280.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 276.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 274.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 274.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 269.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 267.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 255.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 237.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 226.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 224.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 221.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 211.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 209.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 204.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 183.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 181.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 180.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 176.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 169.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 162.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 128.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 119.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1662.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1662.8
FF:10164-103B2 76 years, female 1662.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1572.3
Pig sample Sample description nTPM
Caudate
nTPM: 1572.3
Samples: 4

Max nTPM: 2517.6
Min nTPM: 936.1
Sample A Female 936.1
Sample B Female 1182.7
Sample C Male 2517.6
Sample D Male 1652.7

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