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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:124.4 nTPM
GTEx:124.4 nTPM
FANTOM5:151.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA005792
Squamous epithelial cells Not detected


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 124.4
Samples: 156

Max nTPM: 779.1
Min nTPM: 0.0
Std nTPM: 145.1
Median nTPM: 77.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 779.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 708.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 665.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 641.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 570.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 520.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 514.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 485.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 404.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 343.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 308.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 293.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 290.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 287.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 276.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 274.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 274.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 266.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 264.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 264.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 263.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 254.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 253.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 248.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 243.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 242.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 241.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 224.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 217.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 217.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 215.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 208.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 202.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 197.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 192.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 190.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 187.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 181.9
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 181.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 177.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 173.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 164.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 152.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 152.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 146.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 146.4
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 146.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 141.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 134.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 132.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 124.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 115.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 113.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 111.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 110.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 108.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 107.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 107.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 106.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 104.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 103.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 101.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 99.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 98.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 97.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 96.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 95.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 95.0
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 91.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 88.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 87.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 86.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 86.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 84.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 82.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 81.6
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 79.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 79.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 76.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 75.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 75.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 75.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 74.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 74.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 71.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 70.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 69.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 68.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 67.3
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 66.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 63.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 60.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 56.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 55.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 52.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 51.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 50.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 50.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 47.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 47.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 46.9
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 44.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 43.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 40.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 38.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 37.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 34.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 34.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 34.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 34.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 32.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 31.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 31.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 28.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 28.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 26.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 24.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 23.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 22.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 21.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 21.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 21.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 21.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 21.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 19.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 18.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 18.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 16.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 15.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 15.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 15.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 14.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 13.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 13.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 12.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 9.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 8.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 8.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 8.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 7.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 7.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 6.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 5.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 4.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 3.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 2.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 0.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 0.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 0.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 0.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 151.3
FF:10204-103F6 68 years, female 151.3

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