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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:129.5 nTPM
HPA Brain:171.8 nTPM
GTEx:129.5 nTPM
FANTOM5:663.6 Scaled Tags Per Million
Pig:523.1 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 155.8
1981 Female, age 72, midline 204.5
2048 Male, age 55, midline 155.1
2816 Male, age 47, midline 146.0
2565 Male, age 75, midline 143.3
2194 Female, age 79, both hemispheres 130.1
Cervical spinal cord, dorsal horn
nTPM: 171.8
2296 Male, age 66, both hemispheres 228.1
2173 Female, age 72, unknown 213.0
2069 Male, age 47, both hemispheres 183.4
1877 Male, age 55, unknown 141.6
2721 Male, age 90, both hemispheres 139.6
2297 Male, age 75, both hemispheres 125.1
Cervical spinal cord, ventral horn
nTPM: 151.0
2098 Female, age 72, unknown 239.7
2068 Male, age 55, unknown 149.0
2809 Male, age 90, both hemispheres 140.5
2295 Male, age 66, both hemispheres 131.0
2480 Male, age 75, both hemispheres 128.7
2820 Female, age 79, both hemispheres 117.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 129.5
Samples: 159

Max nTPM: 237.5
Min nTPM: 47.9
Std nTPM: 41.4
Median nTPM: 123.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 237.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 236.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 222.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 212.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 209.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 209.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 209.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 204.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 196.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 196.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 195.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 193.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 193.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 192.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 191.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 188.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 188.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 187.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 186.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 185.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 184.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 180.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 179.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 178.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 176.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 174.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 173.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 172.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 169.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 167.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 166.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 166.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 166.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 165.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 156.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 155.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 155.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 154.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 154.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 152.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 152.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 151.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 150.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 150.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 150.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 150.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 150.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 149.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 149.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 149.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 148.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 146.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 146.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 145.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 145.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 145.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 145.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 144.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 143.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 143.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 143.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 142.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 142.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 141.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 141.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 139.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 139.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 139.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 139.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 133.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 132.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 132.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 132.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 132.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 131.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 131.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 130.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 129.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 125.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 123.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 123.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 123.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 123.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 121.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 120.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 120.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 120.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 119.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 119.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 117.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 117.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 117.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 116.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 116.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 116.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 116.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 116.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 116.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 115.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 114.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 112.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 111.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 110.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 110.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 110.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 109.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 109.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 108.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 108.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 106.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 106.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 105.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 105.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 105.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 103.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 100.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 97.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 97.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 97.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 97.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 97.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 96.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 95.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 95.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 95.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 93.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 92.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 92.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 91.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 90.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 90.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 88.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 88.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 87.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 86.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 83.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 83.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 83.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 81.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 81.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 78.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 78.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 76.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 74.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 73.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 70.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 69.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 68.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 68.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 68.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 66.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 63.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 61.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 59.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 57.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 56.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 56.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 52.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 47.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

663.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 663.6
FF:10159-103A6 76 years, female 737.4
FF:10181-103D1 60 years, female 589.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

523.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 434.8
Samples: 4

Max nTPM: 466.4
Min nTPM: 374.9
Sample A Female 374.9
Sample B Female 466.4
Sample C Male 449.7
Sample D Male 448.0
Ventral spinal cord
nTPM: 523.1
Samples: 4

Max nTPM: 581.7
Min nTPM: 490.7
Sample A Female 518.7
Sample B Female 501.2
Sample C Male 490.7
Sample D Male 581.7

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