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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:194.9 nTPM
HPA:194.9 nTPM
GTEx:111.0 nTPM
FANTOM5:636.3 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.9
overview
Male, age 65
Small intestine sample 232
nTPM: 191.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 215.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 179
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 193.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 111.0
Samples: 187

Max nTPM: 250.7
Min nTPM: 24.9
Std nTPM: 39.4
Median nTPM: 107.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 250.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 240.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 226.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 211.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 208.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 206.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 202.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 184.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 176.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 176.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 174.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 173.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 173.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 172.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 171.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 169.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 168.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 166.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 166.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 165.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 161.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 160.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 159.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 159.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 157.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 154.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 152.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 151.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 148.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 147.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 147.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 146.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 143.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 141.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 140.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 140.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 140.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 136.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 136.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 135.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 134.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 133.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 132.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 132.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 130.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 130.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 129.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 129.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 127.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 127.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 127.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 126.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 125.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 124.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 124.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 124.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 124.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 123.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 123.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 122.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 122.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 122.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 122.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 122.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 121.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 120.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 120.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 118.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 118.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 117.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 117.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 117.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 116.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 115.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 115.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 115.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 115.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 114.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 113.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 112.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 112.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 112.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 111.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 111.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 110.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 110.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 110.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 109.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 109.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 109.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 109.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 107.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 107.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 107.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 107.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 106.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 106.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 106.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 106.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 106.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 106.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 105.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 105.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 105.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 104.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 103.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 102.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 102.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 101.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 101.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 101.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 100.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 100.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 99.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 99.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 99.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 98.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 97.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 97.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 96.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 96.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 96.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 95.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 95.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 93.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 92.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 92.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 90.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 89.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 89.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 89.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 88.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 87.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 86.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 86.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 85.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 85.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 85.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 83.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 83.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 82.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 82.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 81.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 81.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 81.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 81.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 79.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 79.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 79.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 78.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 78.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 78.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 77.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 76.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 76.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 76.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 76.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 76.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 74.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 74.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 74.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 72.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 71.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 69.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 69.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 68.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 68.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 67.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 66.5
GTEX-1192X-2526-SM-59868 50-59 years, male 62.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 60.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 60.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 57.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 57.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 54.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 54.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 53.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 52.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 52.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 52.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 50.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 42.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 42.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 38.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 37.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 32.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 24.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

636.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 636.3
FF:10024-101D6 15,40,85 years, mixed 636.3

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