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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Elongated or late spermatids:
Medium
Leydig cells:
Medium
Pachytene spermatocytes:
High
Peritubular cells:
Low
Preleptotene spermatocytes:
Medium
Round or early spermatids:
High
Sertoli cells:
High
Spermatogonia cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
94.1
nTPM
HPA:
13.5
nTPM
GTEx:
94.1
nTPM
TESTIS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA053611
Leydig cells
Medium
Elongated or late spermatids
Medium
Pachytene spermatocytes
High
Peritubular cells
Low
Preleptotene spermatocytes
Medium
Round or early spermatids
High
Sertoli cells
High
Spermatogonia cells
High
TESTIS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.5
Male, age 56
Testis sample 244 nTPM: 10.8
Cell types%
Cells in seminiferous ducts:
65
Other cell types:
35
Male, age 34
Testis sample 278 nTPM: 0.4
Cell types%
Cells in seminiferous ducts:
75
Other cell types:
25
Male, age 62
Testis sample 279 nTPM: 8.8
Cell types%
Cells in seminiferous ducts:
70
Other cell types:
30
Male, age 34
Testis sample 280 nTPM: 7.5
Cell types%
Cells in seminiferous ducts:
60
Other cell types:
40
Male, age 26
Testis sample 281 nTPM: 22.9
Cell types%
Cells in seminiferous ducts:
55
Other cell types:
45
Male, age 50
Testis sample 282 nTPM: 11.5
Cell types%
Cells in seminiferous ducts:
85
Other cell types:
15
Male, age 37
Testis sample 283 nTPM: 24.6
Cell types%
Cells in seminiferous ducts:
35
Other cell types:
65
Male, age 51
Testis sample 349 nTPM: 1.3
Cell types%
Cells in seminiferous ducts:
65
Other cell types:
35
Male, age 34
Testis sample 354 nTPM: 9.1
Cell types%
Cells in seminiferous ducts:
70
Other cell types:
30
Male, age 26
Testis sample 371 nTPM: 38.5
Cell types%
Cells in seminiferous ducts:
75
Other cell types:
25
TESTIS - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
94.1
GTEx sample id
Sample description
nTPM
Testis Average nTPM: 94.1
Samples: 361
Max nTPM: 276.6
Min nTPM: 40.8
Std nTPM: 26.8
Median nTPM: 90.6
The Human Protein Atlas project is funded
