We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PCBP3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PCBP3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PCBP3
Synonyms FLJ44028, PCBP3-OT1, PCBP3OT
Gene descriptioni

Full gene name according to HGNC.

Poly(rC) binding protein 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 21
Cytoband q22.3
Chromosome location (bp) 45643694 - 45942454
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000183570 (version 109)
Entrez gene 54039
HGNC HGNC:8651
UniProt P57721 (UniProt - Evidence at protein level)
neXtProt NX_P57721
GeneCards PCBP3
Antibodypedia PCBP3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Single-stranded nucleic acid binding protein that binds preferentially to oligo dC.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

DNA-binding, Ribonucleoprotein, RNA-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the KH-domain protein subfamily. Proteins of this subfamily, also referred to as alpha-CPs, bind to RNA with a specificity for C-rich pyrimidine regions. Alpha-CPs play important roles in post-transcriptional activities and have different cellular distributions. The protein encoded by this gene lacks the nuclear localization signals found in other subfamily members. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jan 2017]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PCBP3-201
ENSP00000383159
ENST00000400304
E9PFP8
[Direct mapping] Poly(rC)-binding protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
Show all
361 aa
38.2 kDa
No 0
PCBP3-202
ENSP00000383160
ENST00000400305
J3QT27
[Direct mapping] Poly(rC)-binding protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
Show all
322 aa
34.4 kDa
No 0
PCBP3-203
ENSP00000383163
ENST00000400308
P57721
[Direct mapping] Poly(rC)-binding protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0010468 [regulation of gene expression]
GO:0016071 [mRNA metabolic process]
GO:0051252 [regulation of RNA metabolic process]
GO:0070062 [extracellular exosome]
GO:1990904 [ribonucleoprotein complex]
Show all
345 aa
36.8 kDa
No 0
PCBP3-204
ENSP00000383164
ENST00000400309
P57721
[Direct mapping] Poly(rC)-binding protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0010468 [regulation of gene expression]
GO:0016071 [mRNA metabolic process]
GO:0051252 [regulation of RNA metabolic process]
GO:0070062 [extracellular exosome]
GO:1990904 [ribonucleoprotein complex]
Show all
370 aa
39.3 kDa
No 0
PCBP3-205
ENSP00000383165
ENST00000400310
P57721
[Direct mapping] Poly(rC)-binding protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0010468 [regulation of gene expression]
GO:0016071 [mRNA metabolic process]
GO:0051252 [regulation of RNA metabolic process]
GO:0070062 [extracellular exosome]
GO:1990904 [ribonucleoprotein complex]
Show all
351 aa
37.3 kDa
No 0
PCBP3-206
ENSP00000383168
ENST00000400314
P57721
[Direct mapping] Poly(rC)-binding protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0010468 [regulation of gene expression]
GO:0016071 [mRNA metabolic process]
GO:0051252 [regulation of RNA metabolic process]
GO:0070062 [extracellular exosome]
GO:1990904 [ribonucleoprotein complex]
Show all
371 aa
39.5 kDa
No 0
PCBP3-208
ENSP00000401198
ENST00000449640
E9PFP8
[Direct mapping] Poly(rC)-binding protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
Show all
361 aa
38.2 kDa
No 0
PCBP3-215
ENSP00000448986
ENST00000549265
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
5 aa
0.6 kDa
No 0
PCBP3-222
ENSP00000505796
ENST00000681687
P57721
[Direct mapping] Poly(rC)-binding protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0001227 [DNA-binding transcription repressor activity, RNA polymerase II-specific]
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0003690 [double-stranded DNA binding]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0010468 [regulation of gene expression]
GO:0016071 [mRNA metabolic process]
GO:0051252 [regulation of RNA metabolic process]
GO:0070062 [extracellular exosome]
GO:1990829 [C-rich single-stranded DNA binding]
GO:1990904 [ribonucleoprotein complex]
Show all
371 aa
39.5 kDa
No 0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org