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ZNRF3
HPA
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  • ZNRF3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ZNRF3
Synonyms BK747E2.3, FLJ22057, KIAA1133, RNF203
Gene descriptioni

Full gene name according to HGNC.

Zinc and ring finger 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 22
Cytoband q12.1
Chromosome location (bp) 28883572 - 29057488
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000183579 (version 109)
Entrez gene 84133
HGNC HGNC:18126
UniProt Q9ULT6 (UniProt - Evidence at protein level)
neXtProt NX_Q9ULT6
GeneCards ZNRF3
Antibodypedia ZNRF3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

E3 ubiquitin-protein ligase that acts as a negative regulator of the Wnt signaling pathway by mediating the ubiquitination and subsequent degradation of Wnt receptor complex components Frizzled and LRP6. Acts on both canonical and non-canonical Wnt signaling pathway. Acts as a tumor suppressor in the intestinal stem cell zone by inhibiting the Wnt signaling pathway, thereby restricting the size of the intestinal stem cell zone 1. Along with RSPO2 and RNF43, constitutes a master switch that governs limb specification (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein, Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ubl conjugation pathway, Wnt signaling pathway
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables frizzled binding activity and ubiquitin-protein transferase activity. Involved in cellular protein metabolic process and negative regulation of Wnt signaling pathway. Is integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ZNRF3-201
ENSP00000384456
ENST00000402174
Q9ULT6
[Direct mapping] E3 ubiquitin-protein ligase ZNRF3
Show all
Enzymes
   ENZYME proteins
   Transferases
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004842 [ubiquitin-protein transferase activity]
GO:0005109 [frizzled binding]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0016020 [membrane]
GO:0016055 [Wnt signaling pathway]
GO:0016567 [protein ubiquitination]
GO:0016740 [transferase activity]
GO:0038018 [Wnt receptor catabolic process]
GO:0046872 [metal ion binding]
GO:0060173 [limb development]
GO:0061630 [ubiquitin protein ligase activity]
GO:0072089 [stem cell proliferation]
GO:0090090 [negative regulation of canonical Wnt signaling pathway]
GO:2000051 [negative regulation of non-canonical Wnt signaling pathway]
Show all
836 aa
89.9 kDa
No 1
ZNRF3-202
ENSP00000384553
ENST00000406323
Q9ULT6
[Direct mapping] E3 ubiquitin-protein ligase ZNRF3
Show all
Enzymes
   ENZYME proteins
   Transferases
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004842 [ubiquitin-protein transferase activity]
GO:0005109 [frizzled binding]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0016020 [membrane]
GO:0016055 [Wnt signaling pathway]
GO:0016567 [protein ubiquitination]
GO:0016740 [transferase activity]
GO:0038018 [Wnt receptor catabolic process]
GO:0046872 [metal ion binding]
GO:0060173 [limb development]
GO:0061630 [ubiquitin protein ligase activity]
GO:0072089 [stem cell proliferation]
GO:0090090 [negative regulation of canonical Wnt signaling pathway]
GO:2000051 [negative regulation of non-canonical Wnt signaling pathway]
Show all
836 aa
89.9 kDa
No 1
ZNRF3-203
ENSP00000443824
ENST00000544604
Q9ULT6
[Direct mapping] E3 ubiquitin-protein ligase ZNRF3
Show all
A0A024R1J1
[Target identity:100%; Query identity:100%] RING-type E3 ubiquitin transferase
Show all
Enzymes
   ENZYME proteins
   Transferases
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004842 [ubiquitin-protein transferase activity]
GO:0005109 [frizzled binding]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0016020 [membrane]
GO:0016055 [Wnt signaling pathway]
GO:0016567 [protein ubiquitination]
GO:0016740 [transferase activity]
GO:0030178 [negative regulation of Wnt signaling pathway]
GO:0038018 [Wnt receptor catabolic process]
GO:0046872 [metal ion binding]
GO:0060173 [limb development]
GO:0060828 [regulation of canonical Wnt signaling pathway]
GO:0061630 [ubiquitin protein ligase activity]
GO:0072089 [stem cell proliferation]
GO:0090090 [negative regulation of canonical Wnt signaling pathway]
GO:2000051 [negative regulation of non-canonical Wnt signaling pathway]
GO:2000095 [regulation of Wnt signaling pathway, planar cell polarity pathway]
Show all
936 aa
100.6 kDa
Yes 1

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