We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NDUFB1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • NDUFB1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:434.9 nTPM
FANTOM5:97.7 Scaled Tags Per Million
Pig:68.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA063737
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

434.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 434.9
Samples: 246

Max nTPM: 1517.9
Min nTPM: 193.1
Std nTPM: 163.2
Median nTPM: 407.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1517.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1213.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1137.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1123.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1027.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 932.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 827.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 795.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 778.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 704.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 697.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 672.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 666.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 665.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 656.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 656.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 645.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 632.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 611.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 606.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 605.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 602.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 601.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 599.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 598.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 594.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 589.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 585.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 583.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 581.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 572.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 571.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 564.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 564.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 563.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 554.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 554.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 553.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 552.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 537.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 535.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 532.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 530.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 515.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 515.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 513.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 513.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 513.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 512.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 511.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 510.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 509.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 508.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 507.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 507.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 506.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 498.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 498.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 498.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 492.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 491.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 489.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 487.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 486.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 486.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 482.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 479.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 479.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 478.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 474.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 472.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 471.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 469.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 469.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 468.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 467.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 465.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 464.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 459.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 459.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 456.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 456.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 455.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 455.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 451.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 450.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 450.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 450.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 449.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 448.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 447.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 446.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 446.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 445.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 443.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 441.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 441.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 440.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 438.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 435.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 434.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 434.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 432.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 432.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 432.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 430.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 429.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 428.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 423.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 423.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 422.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 419.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 416.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 415.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 414.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 414.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 414.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 413.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 413.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 412.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 411.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 409.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 407.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 407.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 405.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 401.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 401.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 400.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 399.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 399.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 397.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 397.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 395.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 395.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 394.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 393.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 393.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 388.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 386.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 386.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 385.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 383.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 383.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 381.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 379.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 378.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 377.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 377.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 377.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 375.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 375.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 374.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 374.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 373.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 373.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 372.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 372.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 368.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 367.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 365.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 361.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 361.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 360.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 359.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 357.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 357.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 356.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 355.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 354.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 353.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 351.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 351.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 350.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 349.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 348.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 348.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 347.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 345.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 342.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 342.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 340.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 340.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 338.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 336.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 335.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 334.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 334.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 333.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 332.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 331.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 329.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 329.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 327.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 324.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 324.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 322.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 321.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 321.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 320.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 319.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 319.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 319.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 317.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 316.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 313.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 312.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 310.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 308.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 307.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 306.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 304.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 301.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 301.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 298.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 294.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 294.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 294.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 292.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 289.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 284.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 282.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 279.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 279.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 277.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 277.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 276.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 274.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 273.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 270.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 265.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 262.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 261.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 260.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 250.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 249.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 248.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 245.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 244.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 242.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 232.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 229.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 222.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 219.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 213.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 203.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 193.1
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

97.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 97.7
FF:10164-103B2 76 years, female 97.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.5
Pig sample Sample description nTPM
Caudate
nTPM: 68.5
Samples: 4

Max nTPM: 78.1
Min nTPM: 62.5
Sample A Female 62.5
Sample B Female 70.2
Sample C Male 78.1
Sample D Male 63.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org