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KMT5A
HPA
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  • KMT5A
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

KMT5A
Synonyms PR-Set7, SET07, SET8, SETD8
Gene descriptioni

Full gene name according to HGNC.

Lysine methyltransferase 5A
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband q24.31
Chromosome location (bp) 123384132 - 123409353
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000183955 (version 109)
Entrez gene 387893
HGNC HGNC:29489
UniProt Q9NQR1 (UniProt - Evidence at protein level)
neXtProt NX_Q9NQR1
GeneCards KMT5A
Antibodypedia KMT5A antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Protein-lysine N-methyltransferase that monomethylates both histones and non-histone proteins 1, 2, 3, 4, 5. Specifically monomethylates 'Lys-20' of histone H4 (H4K20me1) 6, 7, 8, 9, 10, 11, 12, 13. H4K20me1 is enriched during mitosis and represents a specific tag for epigenetic transcriptional repression 14, 15, 16, 17, 18, 19, 20. Mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes 21, 22, 23, 24, 25, 26, 27. Required for cell proliferation, probably by contributing to the maintenance of proper higher-order structure of DNA during mitosis 28, 29, 30, 31, 32, 33, 34. Involved in chromosome condensation and proper cytokinesis 35, 36, 37, 38, 39, 40, 41. Nucleosomes are preferred as substrate compared to free histones 42, 43, 44, 45, 46, 47, 48. Mediates monomethylation of p53/TP53 at 'Lys-382', leading to repress p53/TP53-target genes 49. Plays a negative role in TGF-beta response regulation and a positive role in cell migration 50.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Chromatin regulator, Methyltransferase, Repressor, Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cell cycle, Cell division, Mitosis, Transcription, Transcription regulation
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

S-adenosyl-L-methionine
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a protein-lysine N-methyltransferase that can monomethylate Lys-20 of histone H4 to effect transcriptional repression of some genes. The encoded protein is required for cell proliferation and plays a role in chromatin condensation. [provided by RefSeq, May 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
KMT5A-201
ENSP00000384629
ENST00000402868
Q9NQR1
[Direct mapping] N-lysine methyltransferase KMT5A
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0002039 [p53 binding]
GO:0003714 [transcription corepressor activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0005700 [polytene chromosome]
GO:0005829 [cytosol]
GO:0006325 [chromatin organization]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0007049 [cell cycle]
GO:0007076 [mitotic chromosome condensation]
GO:0008168 [methyltransferase activity]
GO:0016278 [lysine N-methyltransferase activity]
GO:0016279 [protein-lysine N-methyltransferase activity]
GO:0016570 [histone modification]
GO:0016740 [transferase activity]
GO:0018024 [histone-lysine N-methyltransferase activity]
GO:0018026 [peptidyl-lysine monomethylation]
GO:0032259 [methylation]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0043516 [regulation of DNA damage response, signal transduction by p53 class mediator]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0051301 [cell division]
GO:0140944 []
GO:1901796 [regulation of signal transduction by p53 class mediator]
Show all
352 aa
39.2 kDa
No 0
KMT5A-202
ENSP00000413811
ENST00000437502
C9JKQ0
[Direct mapping] [Histone H4]-lysine(20) N-methyltransferase
Show all
Metabolic proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0005829 [cytosol]
GO:0016570 [histone modification]
GO:0018024 [histone-lysine N-methyltransferase activity]
GO:0140944 []
Show all
299 aa
34 kDa
Yes 0

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