MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:109.5 nTPM
HPA Brain:100.4 nTPM
GTEx:109.5 nTPM
FANTOM5:135.1 Scaled Tags Per Million
Pig:164.0 nTPM
Mouse:160.9 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 100.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.8
2586 Male, age 75, left hemisphere 119.2
2411 Female, age 72, unknown 100.9
2666 Male, age 74, left hemisphere 97.3
2828 Female, age 72, unknown 96.7
1833 Male, age 53, unknown 96.6
2019 Male, age 18, unknown 89.4
1870 Female, age 42, unknown 86.6
1830 Male, age 51, unknown 82.8
1827 Male, age 72, unknown 78.3
2219 Male, age 76, both hemispheres 60.0
Dorsal raphe nucleus
nTPM: 80.5
2016 Female, age 72, unknown 89.3
2750 Male, age 76, both hemispheres 86.2
2047 Male, age 72, unknown 86.0
1828 Male, age 53, unknown 79.3
2298 Female, age 72, unknown 61.5
Inferior colliculus
nTPM: 80.9
1848 Female, age 42, unknown 89.1
2849 Male, age 72, unknown 82.6
1890 Male, age 53, unknown 81.3
2097 Female, age 72, unknown 70.5
Median raphe nucleus
nTPM: 65.9
2220 Male, age 76, midline 65.9
Periaquaductal grey, anterior
nTPM: 72.1
2502 Female, age 75, unknown 83.3
1947 Male, age 18, unknown 76.8
1795 Male, age 51, unknown 56.3
Periaquaductal grey, dorsal
nTPM: 68.8
1840 Male, age 53, unknown 75.8
1831 Male, age 72, unknown 73.5
2464 Female, age 72, unknown 67.6
2850 Male, age 76, both hemispheres 58.4
Periaquaductal grey, lateral
nTPM: 59.8
2053 Male, age 18, unknown 73.5
2140 Male, age 76, both hemispheres 55.6
2272 Male, age 74, both hemispheres 50.5
Pretectal area
nTPM: 78.2
1817 Female, age 42, unknown 103.5
1815 Male, age 53, unknown 98.9
1944 Female, age 72, unknown 97.0
2007 Male, age 72, unknown 88.8
1816 Male, age 51, unknown 82.7
2316 Male, age 76, right hemisphere 76.1
2825 Male, age 18, unknown 71.1
2407 Male, age 75, both hemispheres 67.0
2667 Female, age 75, unknown 63.5
2273 Male, age 74, both hemispheres 55.9
2224 Female, age 72, unknown 55.4
Red nucleus
nTPM: 100.4
1821 Female, age 72, unknown 132.3
2588 Male, age 74, left hemisphere 114.2
2503 Female, age 72, unknown 108.3
1865 Male, age 51, unknown 107.4
2584 Male, age 75, left hemisphere 100.9
2769 Male, age 72, unknown 99.9
1954 Female, age 42, unknown 96.7
1904 Male, age 53, unknown 95.7
2227 Male, age 72, unknown 92.4
2785 Male, age 18, unknown 89.6
2725 Female, age 75, unknown 84.5
2823 Male, age 76, right hemisphere 83.2
Substantia nigra
nTPM: 88.7
1889 Female, age 72, unknown 100.6
2665 Male, age 74, both hemispheres 92.9
2583 Male, age 75, right hemisphere 91.6
2590 Female, age 75, unknown 91.2
1851 Male, age 51, unknown 90.6
1916 Female, age 42, unknown 89.3
2699 Male, age 18, unknown 88.5
2409 Female, age 72, unknown 83.7
2241 Male, age 72, unknown 82.8
1941 Male, age 53, unknown 76.2
Superior colliculus
nTPM: 85.7
2668 Female, age 75, unknown 99.6
1839 Male, age 51, unknown 96.5
1895 Male, age 76, right hemisphere 95.3
2664 Male, age 75, both hemispheres 94.7
1913 Female, age 42, unknown 92.7
2587 Male, age 74, left hemisphere 89.8
1995 Male, age 72, unknown 80.8
2261 Male, age 18, unknown 75.6
1796 Male, age 53, unknown 72.2
2087 Female, age 72, unknown 59.7
Ventral tegmental area
nTPM: 80.8
2410 Female, age 72, unknown 118.2
1915 Female, age 42, unknown 80.5
1942 Male, age 51, unknown 79.5
2021 Male, age 53, unknown 72.4
2223 Female, age 72, unknown 69.6
2218 Male, age 76, both hemispheres 64.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 109.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.5
Samples: 139

Max nTPM: 198.3
Min nTPM: 48.5
Std nTPM: 32.6
Median nTPM: 103.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 198.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 194.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 188.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 187.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 186.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 181.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 175.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 171.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 169.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 169.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 168.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 135.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 135.1
FF:10158-103A5 76 years, female 135.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 164.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 146.9
Samples: 4

Max nTPM: 177.9
Min nTPM: 115.5
Sample A Female 151.7
Sample B Female 115.5
Sample C Male 142.6
Sample D Male 177.9
Midbrain
nTPM: 164.0
Samples: 4

Max nTPM: 241.6
Min nTPM: 132.8
Sample A Female 241.6
Sample B Female 140.8
Sample C Male 140.6
Sample D Male 132.8
Periaqueductal gray
nTPM: 122.4
Samples: 3

Max nTPM: 134.9
Min nTPM: 109.5
Sample B Female 134.9
Sample C Male 122.9
Sample D Male 109.5
Superior colliculi
nTPM: 138.9
Samples: 4

Max nTPM: 173.0
Min nTPM: 96.0
Sample A Female 145.8
Sample B Female 96.0
Sample C Male 140.7
Sample D Male 173.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 160.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.9
Samples: 4

Max nTPM: 166.2
Min nTPM: 154.6
Sample A Male 154.6
Sample B Male 157.5
Sample C Female 166.2
Sample D Female 165.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
1527 Antisense, RP_Baylor_253965, Mouse strain C57BL/6J (56 days, male) 5.7
1526 Antisense, RP_Baylor_253965, Mouse strain C57BL/6J (56 days, male) 3.9

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