We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
EIF3C
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • EIF3C
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:75.9 nTPM
HPA Brain:141.2 nTPM
GTEx:75.9 nTPM
FANTOM5:12.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 122.7
2565 Male, age 75, midline 141.6
2194 Female, age 79, both hemispheres 136.4
1981 Female, age 72, midline 135.5
2816 Male, age 47, midline 109.1
2048 Male, age 55, midline 90.9
Cervical spinal cord, dorsal horn
nTPM: 128.5
2173 Female, age 72, unknown 147.4
2296 Male, age 66, both hemispheres 141.1
2069 Male, age 47, both hemispheres 140.6
2721 Male, age 90, both hemispheres 118.5
2297 Male, age 75, both hemispheres 116.4
1877 Male, age 55, unknown 107.1
Cervical spinal cord, ventral horn
nTPM: 141.2
2480 Male, age 75, both hemispheres 177.0
2809 Male, age 90, both hemispheres 154.2
2068 Male, age 55, unknown 136.4
2098 Female, age 72, unknown 128.9
2820 Female, age 79, both hemispheres 127.7
2295 Male, age 66, both hemispheres 123.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 75.9
Samples: 159

Max nTPM: 152.8
Min nTPM: 34.4
Std nTPM: 19.0
Median nTPM: 74.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 152.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 118.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 116.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 114.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 113.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 110.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 110.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 109.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 107.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 107.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 105.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 104.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 104.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 103.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 102.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 102.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 101.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 99.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 99.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 98.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 98.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 98.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 97.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 97.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 97.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 96.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 96.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 95.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 94.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 93.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 93.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 93.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 92.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 92.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 92.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 89.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 89.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 88.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 88.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 87.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 86.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 86.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 86.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 85.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 85.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 85.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 84.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 84.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 84.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 83.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 83.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 83.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 83.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 82.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 82.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 81.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 81.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 81.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 81.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 81.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 80.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 79.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 79.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 78.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 78.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 77.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 77.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 77.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 76.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 76.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 76.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 76.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 76.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 75.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 75.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 75.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 75.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 75.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 75.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 74.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 74.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 74.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 73.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 73.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 73.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 73.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 72.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 72.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 71.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 70.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 70.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 70.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 70.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 70.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 70.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 69.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 69.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 68.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 68.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 68.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 67.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 67.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 67.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 67.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 66.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 66.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 66.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 65.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 65.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 65.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 64.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 64.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 64.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 63.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 63.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 63.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 62.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 62.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 62.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 62.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 62.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 62.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 62.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 61.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 61.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 61.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 61.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 61.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 60.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 60.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 58.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 58.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 58.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 57.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 56.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 56.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 56.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 56.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 56.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 56.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 55.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 55.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 55.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 55.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 53.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 52.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 52.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 51.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 51.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 49.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 46.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 44.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 44.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 43.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 40.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 39.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 38.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 34.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 34.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

12.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 12.5
FF:10159-103A6 76 years, female 13.0
FF:10181-103D1 60 years, female 12.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org