HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:55.8 nTPM
HPA Brain:43.8 nTPM
GTEx:55.8 nTPM
FANTOM5:68.6 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:74.2 nTPM
Allen mouse:5.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA054064
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 43.8
Sample id Sample description nTPM
Hippocampus
nTPM: 29.9
1898 Male, age 80, left hemisphere 44.4
1855 Male, age 76, left hemisphere 35.5
2148 Female, age 91, left hemisphere 27.3
2621 Female, age 67, right hemisphere 24.4
2529 Female, age 94, left hemisphere 24.3
1911 Female, age 85, right hemisphere 23.3
Dentate gyrus
nTPM: 30.2
1927 Female, age 91, both hemispheres 41.0
2010 Male, age 76, both hemispheres 36.8
2246 Female, age 85, both hemispheres 28.9
2528 Male, age 74, both hemispheres 28.8
2530 Female, age 94, left hemisphere 23.7
2531 Female, age 67, both hemispheres 21.9
Entorhinal gyrus
nTPM: 31.6
1938 Female, age 85, left hemisphere 39.6
2764 Male, age 80, right hemisphere 37.9
1787 Male, age 76, left hemisphere 32.9
2613 Female, age 94, left hemisphere 32.4
2117 Female, age 91, right hemisphere 23.8
2686 Male, age 75, right hemisphere 22.9
Hippocampus, CA1
nTPM: 34.7
2749 Male, age 80, left hemisphere 43.8
1873 Female, age 85, both hemispheres 39.9
2045 Male, age 76, both hemispheres 38.0
2082 Female, age 91, right hemisphere 26.6
2527 Male, age 74, both hemispheres 25.5
Hippocampus, CA2
nTPM: 32.5
1892 Male, age 76, both hemispheres 45.6
1963 Male, age 80, left hemisphere 39.1
1940 Female, age 85, left hemisphere 32.1
2249 Male, age 74, both hemispheres 29.2
2437 Female, age 94, left hemisphere 26.3
2113 Female, age 91, right hemisphere 22.9
Hippocampus, CA3
nTPM: 30.1
1867 Male, age 76, both hemispheres 37.7
2137 Male, age 80, left hemisphere 36.6
1891 Female, age 85, both hemispheres 30.6
2436 Male, age 74, both hemispheres 27.5
2620 Female, age 94, left hemisphere 25.2
2861 Female, age 67, both hemispheres 22.9
Parahippocampal cortex
nTPM: 31.2
1850 Male, age 80, both hemispheres 46.9
1933 Female, age 85, both hemispheres 39.6
1990 Female, age 91, right hemisphere 36.9
2250 Female, age 67, right hemisphere 32.4
2693 Female, age 94, both hemispheres 31.8
2018 Male, age 76, both hemispheres 29.4
2245 Female, age 91, both hemispheres 28.0
2532 Female, age 72, left hemisphere 27.5
2692 Male, age 74, both hemispheres 22.5
2622 Female, age 67, right hemisphere 16.9
Perirhinal gyrus
nTPM: 43.8
1847 Female, age 91, left hemisphere 54.3
1841 Female, age 85, right hemisphere 47.8
1794 Male, age 80, right hemisphere 45.2
2848 Male, age 76, right hemisphere 39.0
2521 Female, age 94, right hemisphere 32.8
Subiculum
nTPM: 28.3
1977 Female, age 85, both hemispheres 36.9
1901 Male, age 80, both hemispheres 34.4
2438 Female, age 94, left hemisphere 26.5
2619 Male, age 74, both hemispheres 24.4
2729 Female, age 91, right hemisphere 24.1
2042 Male, age 76, both hemispheres 23.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 55.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 55.8
Samples: 197

Max nTPM: 137.0
Min nTPM: 24.5
Std nTPM: 20.7
Median nTPM: 52.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 137.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 131.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 123.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 117.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 102.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 101.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 101.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 100.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 100.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 92.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 91.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.6
FF:10169-103B7 60 years, female 93.4
FF:10153-102I9 76 years, female 43.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 17.3
Pig sample Sample description nTPM
Subiculum
nTPM: 14.4
Samples: 4

Max nTPM: 16.3
Min nTPM: 13.3
Sample A Female 16.3
Sample B Female 14.6
Sample C Male 13.3
Sample D Male 13.3
Dorsal hippocampus
nTPM: 16.2
Samples: 4

Max nTPM: 19.9
Min nTPM: 13.4
Sample A Female 19.9
Sample B Female 16.5
Sample C Male 14.9
Sample D Male 13.4
Entorhinal cortex
nTPM: 15.5
Samples: 4

Max nTPM: 16.5
Min nTPM: 14.1
Sample A Female 16.1
Sample B Female 16.5
Sample C Male 15.3
Sample D Male 14.1
Ventral hippocampus
nTPM: 17.3
Samples: 4

Max nTPM: 22.2
Min nTPM: 13.8
Sample A Female 22.2
Sample B Female 14.2
Sample C Male 18.8
Sample D Male 13.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 74.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 73.5
Samples: 4

Max nTPM: 84.5
Min nTPM: 68.6
Sample A Male 68.6
Sample B Male 84.5
Sample C Female 69.5
Sample D Female 71.5
Hippocampal formation
nTPM: 74.2
Samples: 4

Max nTPM: 81.0
Min nTPM: 65.6
Sample A Male 79.6
Sample B Male 70.6
Sample C Female 65.6
Sample D Female 81.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 5.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.4
83167 Antisense, RP_040407_01_H02, Mouse strain C57BL/6J (56 days, male) 9.2
72713 Antisense, RP_040407_01_H02, Mouse strain C57BL/6J (56 days, male) 9.1
77620389 Antisense, RP_070205_01_E11, Mouse strain C57BL/6J (56 days, male) 1.5
77414123 Antisense, RP_070205_01_E11, Mouse strain C57BL/6J (56 days, male) 0.7

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