MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA Brain:33.4 nTPM
GTEx:9.0 nTPM
FANTOM5:33.1 Scaled Tags Per Million
Pig:7.6 nTPM
Mouse:21.5 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.8
2019 Male, age 18, unknown 36.4
2586 Male, age 75, left hemisphere 35.7
2219 Male, age 76, both hemispheres 35.6
1827 Male, age 72, unknown 31.4
2666 Male, age 74, left hemisphere 30.5
2828 Female, age 72, unknown 30.0
1833 Male, age 53, unknown 29.8
2411 Female, age 72, unknown 27.5
1830 Male, age 51, unknown 27.3
1870 Female, age 42, unknown 24.4
Dorsal raphe nucleus
nTPM: 27.4
2750 Male, age 76, both hemispheres 30.2
2047 Male, age 72, unknown 28.7
2298 Female, age 72, unknown 28.4
1828 Male, age 53, unknown 25.9
2016 Female, age 72, unknown 23.6
Inferior colliculus
nTPM: 29.1
2097 Female, age 72, unknown 30.8
2849 Male, age 72, unknown 30.3
1890 Male, age 53, unknown 28.5
1848 Female, age 42, unknown 26.8
Median raphe nucleus
nTPM: 31.0
2220 Male, age 76, midline 31.0
Periaquaductal grey, anterior
nTPM: 28.4
1795 Male, age 51, unknown 34.1
2502 Female, age 75, unknown 26.2
1947 Male, age 18, unknown 25.1
Periaquaductal grey, dorsal
nTPM: 26.1
2464 Female, age 72, unknown 28.4
1840 Male, age 53, unknown 27.4
1831 Male, age 72, unknown 27.3
2850 Male, age 76, both hemispheres 21.4
Periaquaductal grey, lateral
nTPM: 26.6
2272 Male, age 74, both hemispheres 27.2
2140 Male, age 76, both hemispheres 26.5
2053 Male, age 18, unknown 26.0
Pretectal area
nTPM: 33.4
1816 Male, age 51, unknown 40.9
2007 Male, age 72, unknown 40.8
1817 Female, age 42, unknown 39.1
1944 Female, age 72, unknown 36.7
2407 Male, age 75, both hemispheres 33.4
2667 Female, age 75, unknown 32.8
1815 Male, age 53, unknown 31.8
2224 Female, age 72, unknown 31.3
2316 Male, age 76, right hemisphere 30.9
2825 Male, age 18, unknown 26.2
2273 Male, age 74, both hemispheres 23.6
Red nucleus
nTPM: 28.3
2785 Male, age 18, unknown 38.3
2823 Male, age 76, right hemisphere 35.8
2584 Male, age 75, left hemisphere 35.2
2588 Male, age 74, left hemisphere 32.4
2769 Male, age 72, unknown 27.4
2227 Male, age 72, unknown 26.9
2725 Female, age 75, unknown 26.8
2503 Female, age 72, unknown 26.1
1904 Male, age 53, unknown 25.0
1865 Male, age 51, unknown 23.2
1821 Female, age 72, unknown 21.8
1954 Female, age 42, unknown 20.9
Substantia nigra
nTPM: 26.7
1889 Female, age 72, unknown 33.5
2583 Male, age 75, right hemisphere 30.7
2665 Male, age 74, both hemispheres 29.9
1941 Male, age 53, unknown 28.6
2590 Female, age 75, unknown 27.5
1916 Female, age 42, unknown 27.1
1851 Male, age 51, unknown 24.7
2241 Male, age 72, unknown 22.8
2409 Female, age 72, unknown 22.0
2699 Male, age 18, unknown 19.9
Superior colliculus
nTPM: 30.7
2087 Female, age 72, unknown 38.8
2261 Male, age 18, unknown 35.4
1796 Male, age 53, unknown 33.0
2668 Female, age 75, unknown 32.8
2664 Male, age 75, both hemispheres 31.2
1895 Male, age 76, right hemisphere 28.8
1913 Female, age 42, unknown 28.4
1839 Male, age 51, unknown 27.7
2587 Male, age 74, left hemisphere 25.7
1995 Male, age 72, unknown 25.3
Ventral tegmental area
nTPM: 27.2
1942 Male, age 51, unknown 28.7
2218 Male, age 76, both hemispheres 28.2
2021 Male, age 53, unknown 28.0
2410 Female, age 72, unknown 26.8
2223 Female, age 72, unknown 26.5
1915 Female, age 42, unknown 25.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.0
Samples: 139

Max nTPM: 14.9
Min nTPM: 3.6
Std nTPM: 2.1
Median nTPM: 8.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 14.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 14.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 13.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 12.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 12.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 12.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 12.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 12.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 12.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.1
FF:10158-103A5 76 years, female 33.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.7
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.7
Sample A Female 6.1
Sample B Female 4.7
Sample C Male 6.9
Sample D Male 5.2
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 10.9
Min nTPM: 5.0
Sample A Female 5.0
Sample B Female 5.4
Sample C Male 10.9
Sample D Male 9.0
Periaqueductal gray
nTPM: 5.8
Samples: 3

Max nTPM: 6.9
Min nTPM: 5.2
Sample B Female 5.4
Sample C Male 6.9
Sample D Male 5.2
Superior colliculi
nTPM: 7.3
Samples: 4

Max nTPM: 9.4
Min nTPM: 5.9
Sample A Female 7.0
Sample B Female 5.9
Sample C Male 9.4
Sample D Male 7.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 21.6
Min nTPM: 21.3
Sample A Male 21.6
Sample B Male 21.6
Sample C Female 21.3
Sample D Female 21.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
68799125 Antisense, RP_050217_02_A12, Mouse strain C57BL/6J (56 days, male) 3.1

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