MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.1 nTPM
HPA Brain:68.3 nTPM
GTEx:56.1 nTPM
FANTOM5:20.3 Scaled Tags Per Million
Pig:9.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 68.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.1
2219 Male, age 76, both hemispheres 59.6
1827 Male, age 72, unknown 42.9
2411 Female, age 72, unknown 42.0
1870 Female, age 42, unknown 40.1
1833 Male, age 53, unknown 38.5
1830 Male, age 51, unknown 32.2
2666 Male, age 74, left hemisphere 27.2
2828 Female, age 72, unknown 23.6
2019 Male, age 18, unknown 23.5
2586 Male, age 75, left hemisphere 21.3
Dorsal raphe nucleus
nTPM: 41.9
2298 Female, age 72, unknown 47.9
2750 Male, age 76, both hemispheres 45.9
2047 Male, age 72, unknown 45.2
1828 Male, age 53, unknown 39.7
2016 Female, age 72, unknown 30.5
Inferior colliculus
nTPM: 41.3
2849 Male, age 72, unknown 48.1
1848 Female, age 42, unknown 43.0
2097 Female, age 72, unknown 38.5
1890 Male, age 53, unknown 35.7
Median raphe nucleus
nTPM: 68.3
2220 Male, age 76, midline 68.3
Periaquaductal grey, anterior
nTPM: 43.2
2502 Female, age 75, unknown 53.9
1947 Male, age 18, unknown 40.7
1795 Male, age 51, unknown 35.1
Periaquaductal grey, dorsal
nTPM: 40.1
1840 Male, age 53, unknown 50.7
2850 Male, age 76, both hemispheres 43.3
2464 Female, age 72, unknown 38.9
1831 Male, age 72, unknown 27.4
Periaquaductal grey, lateral
nTPM: 36.0
2140 Male, age 76, both hemispheres 41.4
2053 Male, age 18, unknown 35.3
2272 Male, age 74, both hemispheres 31.3
Pretectal area
nTPM: 33.4
2224 Female, age 72, unknown 55.6
2825 Male, age 18, unknown 42.9
1816 Male, age 51, unknown 37.9
1944 Female, age 72, unknown 34.6
2007 Male, age 72, unknown 32.3
2316 Male, age 76, right hemisphere 31.9
2273 Male, age 74, both hemispheres 28.7
1817 Female, age 42, unknown 26.9
2667 Female, age 75, unknown 26.6
1815 Male, age 53, unknown 25.7
2407 Male, age 75, both hemispheres 24.4
Red nucleus
nTPM: 24.8
2725 Female, age 75, unknown 32.8
2227 Male, age 72, unknown 29.4
1821 Female, age 72, unknown 28.6
1954 Female, age 42, unknown 28.4
2584 Male, age 75, left hemisphere 28.0
2769 Male, age 72, unknown 26.0
2588 Male, age 74, left hemisphere 22.8
2503 Female, age 72, unknown 22.5
2785 Male, age 18, unknown 21.2
2823 Male, age 76, right hemisphere 20.1
1904 Male, age 53, unknown 18.8
1865 Male, age 51, unknown 18.6
Substantia nigra
nTPM: 44.7
1916 Female, age 42, unknown 69.9
1941 Male, age 53, unknown 54.7
2241 Male, age 72, unknown 54.2
2665 Male, age 74, both hemispheres 51.0
2409 Female, age 72, unknown 45.3
1851 Male, age 51, unknown 43.6
1889 Female, age 72, unknown 37.3
2590 Female, age 75, unknown 36.6
2699 Male, age 18, unknown 36.1
2583 Male, age 75, right hemisphere 18.9
Superior colliculus
nTPM: 29.2
1895 Male, age 76, right hemisphere 44.6
2261 Male, age 18, unknown 42.2
1839 Male, age 51, unknown 40.8
1796 Male, age 53, unknown 33.0
2087 Female, age 72, unknown 28.4
2587 Male, age 74, left hemisphere 28.1
2668 Female, age 75, unknown 22.8
2664 Male, age 75, both hemispheres 20.5
1913 Female, age 42, unknown 17.4
1995 Male, age 72, unknown 14.3
Ventral tegmental area
nTPM: 46.4
2218 Male, age 76, both hemispheres 62.2
1915 Female, age 42, unknown 55.8
2410 Female, age 72, unknown 42.6
1942 Male, age 51, unknown 42.2
2021 Male, age 53, unknown 38.6
2223 Female, age 72, unknown 37.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 56.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.1
Samples: 139

Max nTPM: 174.5
Min nTPM: 11.1
Std nTPM: 35.7
Median nTPM: 44.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 174.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 161.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 156.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 153.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 141.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 135.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 129.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 122.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 120.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 118.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 116.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.3
FF:10158-103A5 76 years, female 20.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.2
Samples: 4

Max nTPM: 9.2
Min nTPM: 1.6
Sample A Female 9.2
Sample B Female 4.1
Sample C Male 5.9
Sample D Male 1.6
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 14.3
Min nTPM: 3.6
Sample A Female 7.3
Sample B Female 7.8
Sample C Male 3.6
Sample D Male 14.3
Periaqueductal gray
nTPM: 9.4
Samples: 3

Max nTPM: 10.1
Min nTPM: 8.0
Sample B Female 8.0
Sample C Male 10.1
Sample D Male 10.0
Superior colliculi
nTPM: 9.8
Samples: 4

Max nTPM: 15.8
Min nTPM: 7.0
Sample A Female 15.8
Sample B Female 7.7
Sample C Male 7.0
Sample D Male 8.8

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