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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:397.6 nTPM
HPA Brain:341.0 nTPM
GTEx:397.6 nTPM
FANTOM5:235.9 Scaled Tags Per Million
Pig:125.7 nTPM
Mouse:830.0 nTPM
Allen mouse:3.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.0
Sample id Sample description nTPM
Amygdala
nTPM: 182.1
2517 Female, age 94, left hemisphere 275.8
2814 Male, age 76, right hemisphere 236.5
1987 Female, age 91, left hemisphere 184.0
2514 Male, age 75, right hemisphere 126.3
2695 Female, age 67, right hemisphere 88.0
Basal amygdala
nTPM: 341.0
2685 Female, age 94, left hemisphere 480.2
2243 Female, age 91, right hemisphere 380.1
2827 Female, age 67, right hemisphere 362.4
2110 Male, age 80, left hemisphere 300.9
1955 Male, age 76, both hemispheres 273.9
2609 Male, age 75, right hemisphere 248.6
Central amygdala
nTPM: 247.5
2826 Female, age 94, left hemisphere 424.4
2239 Male, age 80, left hemisphere 249.0
2701 Female, age 91, right hemisphere 209.0
1905 Male, age 76, both hemispheres 200.0
2515 Male, age 75, right hemisphere 155.3
Corticomedial amygdala
nTPM: 300.6
2535 Female, age 67, right hemisphere 460.6
2429 Female, age 94, left hemisphere 334.8
2829 Male, age 80, left hemisphere 309.1
2240 Male, age 76, both hemispheres 255.7
2242 Female, age 91, right hemisphere 248.9
2428 Male, age 75, right hemisphere 194.8
Lateral amygdala
nTPM: 261.5
2534 Female, age 94, left hemisphere 519.3
2256 Male, age 80, left hemisphere 288.2
2255 Female, age 91, right hemisphere 249.4
1883 Male, age 76, both hemispheres 244.7
2830 Female, age 67, right hemisphere 142.0
2516 Male, age 75, right hemisphere 125.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

397.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 397.6
Samples: 152

Max nTPM: 1447.2
Min nTPM: 30.6
Std nTPM: 227.2
Median nTPM: 355.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1447.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1032.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 929.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 928.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 852.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 838.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 800.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 777.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 777.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 765.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 755.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 753.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 737.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 733.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 693.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 691.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 690.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 687.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 682.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 668.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 653.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 651.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 642.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 641.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 616.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 615.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 601.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 596.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 593.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 590.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 586.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 574.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 565.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 563.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 558.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 555.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 550.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 549.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 530.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 527.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 520.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 518.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 518.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 509.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 504.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 498.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 497.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 486.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 485.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 483.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 475.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 464.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 457.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 449.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 448.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 447.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 446.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 435.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 434.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 434.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 426.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 423.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 417.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 416.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 413.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 411.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 406.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 402.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 401.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 398.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 395.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 391.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 386.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 383.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 379.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 355.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 354.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 344.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 339.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 326.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 322.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 322.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 312.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 311.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 307.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 302.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 300.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 298.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 294.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 290.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 285.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 284.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 281.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 280.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 278.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 277.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 274.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 273.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 273.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 271.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 264.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 260.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 260.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 259.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 256.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 243.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 242.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 234.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 232.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 227.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 225.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 225.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 224.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 222.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 221.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 220.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 215.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 207.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 205.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 204.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 204.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 202.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 201.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 200.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 196.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 189.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 183.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 179.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 179.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 177.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 177.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 175.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 172.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 167.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 164.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 162.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 160.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 153.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 152.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 150.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 144.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 140.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 129.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 127.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 119.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 96.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 87.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 65.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 60.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 58.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 31.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

235.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 235.9
FF:10151-102I7 76 years, female 235.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.7
Pig sample Sample description nTPM
Amygdala
nTPM: 125.7
Samples: 4

Max nTPM: 185.5
Min nTPM: 71.2
Sample A Female 185.5
Sample B Female 71.2
Sample C Male 94.0
Sample D Male 152.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

830.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 830.1
Samples: 4

Max nTPM: 894.5
Min nTPM: 773.2
Sample A Male 773.2
Sample B Male 834.6
Sample C Female 894.5
Sample D Female 817.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.4
958 Antisense, RP_Baylor_102973, Mouse strain C57BL/6J (56 days, male) 6.7
959 Antisense, RP_Baylor_102973, Mouse strain C57BL/6J (56 days, male) 3.5
75990859 Antisense, RP_060608_01_F09, Mouse strain C57BL/6J (56 days, male) 0.1

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