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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:130.9 nTPM
HPA Brain:51.3 nTPM
GTEx:130.9 nTPM
FANTOM5:161.5 Scaled Tags Per Million
Pig:131.3 nTPM
Mouse:320.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.3
Sample id Sample description nTPM
Amygdala
nTPM: 51.3
2814 Male, age 76, right hemisphere 69.7
2514 Male, age 75, right hemisphere 49.3
1987 Female, age 91, left hemisphere 47.9
2695 Female, age 67, right hemisphere 46.7
2517 Female, age 94, left hemisphere 43.1
Basal amygdala
nTPM: 40.1
2609 Male, age 75, right hemisphere 47.0
1955 Male, age 76, both hemispheres 46.1
2685 Female, age 94, left hemisphere 45.4
2243 Female, age 91, right hemisphere 38.4
2110 Male, age 80, left hemisphere 37.7
2827 Female, age 67, right hemisphere 26.1
Central amygdala
nTPM: 49.3
1905 Male, age 76, both hemispheres 69.4
2826 Female, age 94, left hemisphere 59.9
2239 Male, age 80, left hemisphere 39.7
2515 Male, age 75, right hemisphere 39.4
2701 Female, age 91, right hemisphere 38.1
Corticomedial amygdala
nTPM: 42.0
2242 Female, age 91, right hemisphere 46.9
2429 Female, age 94, left hemisphere 46.2
2240 Male, age 76, both hemispheres 44.5
2829 Male, age 80, left hemisphere 44.4
2428 Male, age 75, right hemisphere 44.1
2535 Female, age 67, right hemisphere 25.7
Lateral amygdala
nTPM: 41.6
1883 Male, age 76, both hemispheres 62.4
2516 Male, age 75, right hemisphere 49.5
2534 Female, age 94, left hemisphere 47.9
2256 Male, age 80, left hemisphere 31.4
2830 Female, age 67, right hemisphere 30.8
2255 Female, age 91, right hemisphere 27.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 130.9
Samples: 152

Max nTPM: 452.0
Min nTPM: 74.9
Std nTPM: 43.4
Median nTPM: 120.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 452.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 277.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 242.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 232.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 231.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 221.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 214.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 204.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 200.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 198.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 197.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 187.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 180.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 180.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 179.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 177.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 177.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 171.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 170.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 161.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 161.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 160.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 159.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 158.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 157.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 157.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 156.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 155.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 154.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 154.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 152.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 152.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 151.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 151.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 150.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 149.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 147.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 145.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 144.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 142.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 142.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 141.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 139.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 137.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 137.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 136.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 136.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 135.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 134.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 133.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 133.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 132.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 132.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 131.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 131.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 130.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 129.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 128.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 128.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 127.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 127.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 127.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 126.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 125.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 125.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 125.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 124.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 122.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 122.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 122.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 121.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 121.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 120.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 120.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 120.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 120.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 120.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 119.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 119.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 118.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 117.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 117.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 117.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 116.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 115.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 115.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 115.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 115.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 115.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 115.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 115.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 114.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 114.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 114.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 114.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 114.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 113.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 113.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 112.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 111.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 111.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 110.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 110.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 110.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 110.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 110.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 109.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 108.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 108.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 107.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 107.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 106.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 106.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 105.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 105.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 105.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 105.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 104.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 104.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 104.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 103.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 103.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 102.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 102.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 102.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 102.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 101.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 101.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 100.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 100.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 99.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 99.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 98.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 98.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 96.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 96.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 95.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 93.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 91.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 91.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 90.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 89.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 89.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 86.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 85.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 85.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 83.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 82.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 77.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 75.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 74.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

161.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 161.5
FF:10151-102I7 76 years, female 161.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.3
Pig sample Sample description nTPM
Amygdala
nTPM: 131.3
Samples: 4

Max nTPM: 171.7
Min nTPM: 103.6
Sample A Female 171.7
Sample B Female 126.3
Sample C Male 123.5
Sample D Male 103.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 320.4
Samples: 4

Max nTPM: 344.2
Min nTPM: 291.6
Sample A Male 319.9
Sample B Male 325.8
Sample C Female 344.2
Sample D Female 291.6

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