We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
H1-10
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • H1-10
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:67.7 nTPM
HPA Brain:99.6 nTPM
GTEx:67.7 nTPM
FANTOM5:174.5 Scaled Tags Per Million
Pig:87.5 nTPM
Mouse:10.0 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.6
Sample id Sample description nTPM
Amygdala
nTPM: 91.7
1987 Female, age 91, left hemisphere 107.1
2517 Female, age 94, left hemisphere 95.2
2514 Male, age 75, right hemisphere 90.5
2695 Female, age 67, right hemisphere 86.1
2814 Male, age 76, right hemisphere 79.4
Basal amygdala
nTPM: 98.5
2609 Male, age 75, right hemisphere 104.9
2827 Female, age 67, right hemisphere 102.8
2685 Female, age 94, left hemisphere 102.0
2110 Male, age 80, left hemisphere 101.2
2243 Female, age 91, right hemisphere 90.3
1955 Male, age 76, both hemispheres 90.0
Central amygdala
nTPM: 96.8
2826 Female, age 94, left hemisphere 123.6
2239 Male, age 80, left hemisphere 107.9
2515 Male, age 75, right hemisphere 90.9
2701 Female, age 91, right hemisphere 88.0
1905 Male, age 76, both hemispheres 73.6
Corticomedial amygdala
nTPM: 91.8
2535 Female, age 67, right hemisphere 126.2
2829 Male, age 80, left hemisphere 104.0
2242 Female, age 91, right hemisphere 93.3
2429 Female, age 94, left hemisphere 84.5
2428 Male, age 75, right hemisphere 76.3
2240 Male, age 76, both hemispheres 66.4
Lateral amygdala
nTPM: 99.6
2534 Female, age 94, left hemisphere 120.5
2256 Male, age 80, left hemisphere 110.1
2255 Female, age 91, right hemisphere 105.4
2830 Female, age 67, right hemisphere 93.5
2516 Male, age 75, right hemisphere 89.1
1883 Male, age 76, both hemispheres 79.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 67.7
Samples: 152

Max nTPM: 133.2
Min nTPM: 18.5
Std nTPM: 18.3
Median nTPM: 66.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 133.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 117.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 112.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 109.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 102.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 100.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 98.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 96.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 96.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 95.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 93.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 91.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 90.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 89.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 89.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 88.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 87.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 87.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 86.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 86.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 86.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 84.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 84.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 84.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 84.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 84.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 83.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 83.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 83.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 82.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 82.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 82.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 81.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 80.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 79.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 79.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 79.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 79.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 78.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 78.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 78.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 78.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 77.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 77.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 75.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 75.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 75.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 75.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 74.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 74.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 74.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 74.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 73.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 73.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 73.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 73.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 73.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 73.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 72.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 72.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 72.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 72.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 72.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 70.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 69.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 69.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 69.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 69.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 68.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 68.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 68.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 67.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 67.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 66.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 66.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 66.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 66.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 65.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 65.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 65.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 65.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 64.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 64.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 64.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 64.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 64.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 63.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 63.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 63.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 63.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 62.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 60.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 60.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 60.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 59.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 59.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 59.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 58.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 58.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 58.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 58.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 58.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 58.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 57.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 57.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 57.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 57.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 57.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 56.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 56.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 56.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 56.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 55.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 55.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 55.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 55.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 54.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 54.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 54.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 53.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 52.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 51.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 51.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 50.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 50.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 50.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 50.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 50.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 49.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 49.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 48.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 48.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 48.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 48.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 46.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 46.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 44.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 43.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 41.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 39.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 33.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 32.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 28.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 28.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 28.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 26.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 25.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 18.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

174.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 174.5
FF:10151-102I7 76 years, female 174.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.5
Pig sample Sample description nTPM
Amygdala
nTPM: 87.6
Samples: 4

Max nTPM: 116.4
Min nTPM: 75.9
Sample A Female 116.4
Sample B Female 75.9
Sample C Male 77.0
Sample D Male 81.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 10.0
Samples: 4

Max nTPM: 12.2
Min nTPM: 7.7
Sample A Male 11.1
Sample B Male 8.9
Sample C Female 12.2
Sample D Female 7.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org