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CIB1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:125.0 nTPM
HPA:89.0 nTPM
GTEx:125.0 nTPM
FANTOM5:176.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042413Antibody HPA074310Antibody CAB012991
Glandular cells MediumMediumLow







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.0
overview
Male, age 65
Small intestine sample 232
nTPM: 91.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 119
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 69.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 76.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 125.0
Samples: 187

Max nTPM: 371.4
Min nTPM: 36.1
Std nTPM: 58.2
Median nTPM: 115.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 371.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 267.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 260.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 256.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 250.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 245.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 245.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 243.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 240.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 235.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 223.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 223.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 220.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 220.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 217.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 214.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 214.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 212.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 212.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 209.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 208.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 205.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 203.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 197.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 197.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 196.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 194.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 194.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 192.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 189.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 185.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 183.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 182.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 181.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 178.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 177.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 177.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 176.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 172.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 169.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 168.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 167.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 166.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 163.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 163.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 161.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 161.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 157.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 157.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 155.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 150.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 150.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 146.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 146.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 145.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 145.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 145.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 141.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 141.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 140.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 140.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 139.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 139.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 137.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 137.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 137.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 137.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 136.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 136.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 136.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 136.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 134.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 133.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 131.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 131.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 131.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 128.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 127.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 127.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 126.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 123.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 123.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 122.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 122.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 120.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 120.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 120.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 118.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 118.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 116.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 116.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 115.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 115.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 115.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 114.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 114.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 114.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 113.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 113.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 113.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 111.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 110.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 110.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 109.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 109.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 109.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 108.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 108.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 107.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 106.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 105.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 105.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 105.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 105.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 105.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 105.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 104.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 103.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 103.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 102.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 101.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 101.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 98.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 96.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 95.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 94.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 92.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 89.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 89.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 88.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 87.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 87.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 86.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 85.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 83.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 83.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 82.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 82.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 81.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 81.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 81.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 80.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 80.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 79.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 79.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 79.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 77.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 76.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 73.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 71.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 70.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 69.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 68.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 66.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 66.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 64.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 63.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 63.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 63.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 62.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 62.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 60.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 60.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 58.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 57.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 57.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 54.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 53.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 52.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 52.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 51.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 51.8
GTEX-1192X-2526-SM-59868 50-59 years, male 50.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 50.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 49.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 49.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 47.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 46.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 45.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 44.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 44.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 43.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 41.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 41.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 40.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 38.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 36.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

176.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 176.2
FF:10024-101D6 15,40,85 years, mixed 176.2

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