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FLRT2
HPA
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  • FLRT2
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

FLRT2
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Fibronectin leucine rich transmembrane protein 2
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 14
Cytoband q31.3
Chromosome location (bp) 85530144 - 85654428
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000185070 (version 109)
Entrez gene 23768
HGNC HGNC:3761
UniProt O43155 (UniProt - Evidence at protein level)
neXtProt NX_O43155
GeneCards FLRT2
Antibodypedia FLRT2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Functions in cell-cell adhesion, cell migration and axon guidance. Mediates cell-cell adhesion via its interactions with ADGRL3 and probably also other latrophilins that are expressed at the surface of adjacent cells. May play a role in the migration of cortical neurons during brain development via its interaction with UNC5D. Mediates axon growth cone collapse and plays a repulsive role in neuron guidance via its interaction with UNC5D, and possibly also other UNC-5 family members. Plays a role in fibroblast growth factor-mediated signaling cascades. Required for normal organization of the cardiac basement membrane during embryogenesis, and for normal embryonic epicardium and heart morphogenesis.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cell adhesion
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the fibronectin leucine rich transmembrane (FLRT) family of cell adhesion molecules, which regulate early embryonic vascular and neural development. The encoded type I transmembrane protein has an extracellular region consisting of an N-terminal leucine-rich repeat domain and a type 3 fibronectin domain, followed by a transmembrane domain and a short C-terminal cytoplasmic tail domain. It functions as both a homophilic cell adhesion molecule and a heterophilic chemorepellent through its interaction with members of the uncoordinated-5 receptor family. Proteolytic removal of the extracellular region controls the migration of neurons in the developing cortex. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
FLRT2-201
ENSP00000332879
ENST00000330753
O43155
[Direct mapping] Leucine-rich repeat transmembrane protein FLRT2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003007 [heart morphogenesis]
GO:0005104 [fibroblast growth factor receptor binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0005925 [focal adhesion]
GO:0007155 [cell adhesion]
GO:0007411 [axon guidance]
GO:0008150 [biological_process]
GO:0008543 [fibroblast growth factor receptor signaling pathway]
GO:0016020 [membrane]
GO:0030674 [protein-macromolecule adaptor activity]
GO:0031012 [extracellular matrix]
GO:0043005 [neuron projection]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045202 [synapse]
GO:0045499 [chemorepellent activity]
GO:0050919 [negative chemotaxis]
GO:0051965 [positive regulation of synapse assembly]
GO:0061343 [cell adhesion involved in heart morphogenesis]
GO:0070062 [extracellular exosome]
GO:0070161 [anchoring junction]
GO:0071711 [basement membrane organization]
GO:2001222 [regulation of neuron migration]
Show all
660 aa
74 kDa
Yes 1
FLRT2-204
ENSP00000451050
ENST00000554746
O43155
[Direct mapping] Leucine-rich repeat transmembrane protein FLRT2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003007 [heart morphogenesis]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0005925 [focal adhesion]
GO:0007155 [cell adhesion]
GO:0008150 [biological_process]
GO:0008543 [fibroblast growth factor receptor signaling pathway]
GO:0016020 [membrane]
GO:0030674 [protein-macromolecule adaptor activity]
GO:0031012 [extracellular matrix]
GO:0043005 [neuron projection]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045202 [synapse]
GO:0050919 [negative chemotaxis]
GO:0061343 [cell adhesion involved in heart morphogenesis]
GO:0070062 [extracellular exosome]
GO:0070161 [anchoring junction]
GO:0071711 [basement membrane organization]
Show all
660 aa
74 kDa
Yes 1
FLRT2-208
ENSP00000507088
ENST00000682132
O43155
[Direct mapping] Leucine-rich repeat transmembrane protein FLRT2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003007 [heart morphogenesis]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0005925 [focal adhesion]
GO:0007155 [cell adhesion]
GO:0008150 [biological_process]
GO:0008543 [fibroblast growth factor receptor signaling pathway]
GO:0016020 [membrane]
GO:0030674 [protein-macromolecule adaptor activity]
GO:0031012 [extracellular matrix]
GO:0043005 [neuron projection]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045202 [synapse]
GO:0050919 [negative chemotaxis]
GO:0061343 [cell adhesion involved in heart morphogenesis]
GO:0070062 [extracellular exosome]
GO:0070161 [anchoring junction]
GO:0071711 [basement membrane organization]
Show all
660 aa
74 kDa
Yes 1
FLRT2-209
ENSP00000507815
ENST00000683129
O43155
[Direct mapping] Leucine-rich repeat transmembrane protein FLRT2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003007 [heart morphogenesis]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0005925 [focal adhesion]
GO:0007155 [cell adhesion]
GO:0008150 [biological_process]
GO:0008543 [fibroblast growth factor receptor signaling pathway]
GO:0016020 [membrane]
GO:0030674 [protein-macromolecule adaptor activity]
GO:0031012 [extracellular matrix]
GO:0043005 [neuron projection]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045202 [synapse]
GO:0050919 [negative chemotaxis]
GO:0061343 [cell adhesion involved in heart morphogenesis]
GO:0070062 [extracellular exosome]
GO:0070161 [anchoring junction]
GO:0071711 [basement membrane organization]
Show all
660 aa
74 kDa
Yes 1
FLRT2-210
ENSP00000507928
ENST00000684303
A0A804HKH2
[Direct mapping] Leucine-rich repeat transmembrane protein FLRT2
Show all
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
183 aa
20.4 kDa
Yes 0

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