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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:88.6 nTPM
HPA Brain:68.2 nTPM
GTEx:88.6 nTPM
FANTOM5:180.9 Scaled Tags Per Million
Pig:79.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 68.2
2816 Male, age 47, midline 78.6
1981 Female, age 72, midline 69.0
2048 Male, age 55, midline 67.2
2565 Male, age 75, midline 65.5
2194 Female, age 79, both hemispheres 60.9
Cervical spinal cord, dorsal horn
nTPM: 65.5
2296 Male, age 66, both hemispheres 114.6
2173 Female, age 72, unknown 77.3
1877 Male, age 55, unknown 57.8
2069 Male, age 47, both hemispheres 56.3
2721 Male, age 90, both hemispheres 50.1
2297 Male, age 75, both hemispheres 36.9
Cervical spinal cord, ventral horn
nTPM: 65.3
2098 Female, age 72, unknown 74.9
2820 Female, age 79, both hemispheres 73.2
2068 Male, age 55, unknown 67.9
2295 Male, age 66, both hemispheres 63.0
2480 Male, age 75, both hemispheres 57.1
2809 Male, age 90, both hemispheres 56.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 88.6
Samples: 159

Max nTPM: 211.0
Min nTPM: 15.9
Std nTPM: 39.5
Median nTPM: 85.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 211.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 194.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 187.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 176.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 170.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 170.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 167.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 165.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 158.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 154.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 153.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 148.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 148.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 147.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 147.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 145.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 143.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 141.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 140.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 136.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 131.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 129.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 129.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 129.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 126.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 125.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 125.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 121.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 121.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 120.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 120.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 120.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 118.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 117.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 116.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 116.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 115.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 113.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 113.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 112.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 112.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 112.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 112.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 112.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 110.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 110.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 109.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 108.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 108.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 107.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 106.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 106.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 106.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 106.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 104.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 104.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 104.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 103.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 102.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 102.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 100.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 99.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 99.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 99.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 96.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 95.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 94.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 93.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 92.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 91.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 91.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 90.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 90.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 89.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 89.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 89.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 87.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 86.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 85.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 85.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 84.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 84.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 83.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 82.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 82.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 81.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 81.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 80.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 80.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 78.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 77.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 77.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 76.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 75.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 74.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 73.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 72.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 72.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 71.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 69.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 67.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 67.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 67.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 67.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 66.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 66.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 65.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 65.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 65.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 63.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 63.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 62.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 61.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 60.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 59.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 58.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 58.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 57.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 57.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 57.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 56.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 56.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 56.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 55.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 55.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 55.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 54.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 54.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 53.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 52.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 51.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 50.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 50.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 49.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 48.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 47.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 46.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 44.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 43.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 43.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 42.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 41.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 41.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 39.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 38.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 38.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 37.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 36.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 36.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 36.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 31.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 30.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 27.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 26.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 23.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 20.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 20.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 16.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 15.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

180.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 180.9
FF:10181-103D1 60 years, female 209.8
FF:10159-103A6 76 years, female 151.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 77.1
Samples: 4

Max nTPM: 85.7
Min nTPM: 66.6
Sample A Female 66.6
Sample B Female 77.4
Sample C Male 85.7
Sample D Male 78.8
Ventral spinal cord
nTPM: 79.6
Samples: 4

Max nTPM: 88.2
Min nTPM: 72.1
Sample A Female 82.2
Sample B Female 72.1
Sample C Male 75.8
Sample D Male 88.2

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