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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:64.2 nTPM
HPA Brain:28.6 nTPM
GTEx:64.2 nTPM
FANTOM5:360.2 Scaled Tags Per Million
Pig:13.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 28.6
2048 Male, age 55, midline 33.8
1981 Female, age 72, midline 30.4
2816 Male, age 47, midline 30.4
2194 Female, age 79, both hemispheres 26.6
2565 Male, age 75, midline 22.0
Cervical spinal cord, dorsal horn
nTPM: 26.5
2296 Male, age 66, both hemispheres 31.6
2173 Female, age 72, unknown 30.3
1877 Male, age 55, unknown 29.9
2069 Male, age 47, both hemispheres 25.4
2721 Male, age 90, both hemispheres 24.1
2297 Male, age 75, both hemispheres 17.8
Cervical spinal cord, ventral horn
nTPM: 26.9
2098 Female, age 72, unknown 33.7
2809 Male, age 90, both hemispheres 29.7
2068 Male, age 55, unknown 27.7
2480 Male, age 75, both hemispheres 25.3
2820 Female, age 79, both hemispheres 23.1
2295 Male, age 66, both hemispheres 22.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 64.2
Samples: 159

Max nTPM: 224.2
Min nTPM: 31.5
Std nTPM: 25.2
Median nTPM: 58.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 224.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 172.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 155.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 150.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 148.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 127.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 125.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 123.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 111.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 99.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 99.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 89.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 87.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 83.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 82.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 82.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 82.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 81.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 80.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 78.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 78.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 78.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 77.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 77.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 77.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 76.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 72.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 72.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 72.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 72.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 72.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 71.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 71.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 71.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 71.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 70.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 69.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 69.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 68.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 68.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 68.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 68.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 67.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 67.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 67.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 67.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 67.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 66.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 66.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 66.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 65.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 65.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 65.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 65.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 64.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 64.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 64.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 64.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 64.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 64.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 62.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 62.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 62.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 62.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 62.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 62.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 61.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 61.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 60.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 60.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 60.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 59.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 59.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 59.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 59.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 59.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 59.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 59.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 59.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 58.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 58.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 58.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 58.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 58.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 58.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 57.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 57.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 57.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 56.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 56.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 56.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 55.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 55.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 55.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 55.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 55.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 54.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 54.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 54.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 54.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 53.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 53.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 53.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 53.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 53.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 53.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 52.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 52.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 52.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 52.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 52.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 52.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 52.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 51.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 51.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 51.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 51.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 51.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 51.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 51.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 51.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 50.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 50.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 50.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 50.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 50.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 49.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 49.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 49.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 49.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 49.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 48.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 48.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 48.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 48.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 47.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 47.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 47.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 47.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 45.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 45.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 45.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 45.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 44.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 44.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 43.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 42.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 41.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 41.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 40.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 40.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 40.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 39.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 39.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 38.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 37.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 33.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 32.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 31.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

360.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 360.2
FF:10181-103D1 60 years, female 443.0
FF:10159-103A6 76 years, female 277.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 12.1
Samples: 4

Max nTPM: 14.0
Min nTPM: 10.2
Sample A Female 14.0
Sample B Female 12.8
Sample C Male 10.2
Sample D Male 11.3
Ventral spinal cord
nTPM: 13.3
Samples: 4

Max nTPM: 14.8
Min nTPM: 11.7
Sample A Female 14.8
Sample B Female 11.7
Sample C Male 12.5
Sample D Male 14.3

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