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TCN2
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

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  • STRUCT & INT

  • TCN2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TCN2
Synonyms D22S676, D22S750, TC2
Gene descriptioni

Full gene name according to HGNC.

Transcobalamin 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Secreted, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 22
Cytoband q12.2
Chromosome location (bp) 30607003 - 30627271
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

12
Ensembl ENSG00000185339 (version 109)
Entrez gene 6948
HGNC HGNC:11653
UniProt P20062 (UniProt - Evidence at protein level)
neXtProt NX_P20062
GeneCards TCN2
Antibodypedia TCN2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Primary vitamin B12-binding and transport protein. Delivers cobalamin to cells.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cobalt transport, Ion transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Cobalt, Metal-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the vitamin B12-binding protein family. This family of proteins, alternatively referred to as R binders, is expressed in various tissues and secretions. This plasma protein binds cobalamin and mediates the transport of cobalamin into cells. This protein and other mammalian cobalamin-binding proteins, such as transcobalamin I and gastric intrisic factor, may have evolved by duplication of a common ancestral gene. Alternative splicing results in multiple transcript variants.[provided by RefSeq, May 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TCN2-201
ENSP00000215838
ENST00000215838
P20062
[Direct mapping] Transcobalamin-2
Show all
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Disease related genes
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006824 [cobalt ion transport]
GO:0009897 [external side of plasma membrane]
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
GO:0043202 [lysosomal lumen]
GO:0046872 [metal ion binding]
GO:0140355 [cargo receptor ligand activity]
GO:0140677 [molecular function activator activity]
Show all
427 aa
47.5 kDa
Yes 0
TCN2-202
ENSP00000385914
ENST00000405742
B5MBX2
[Direct mapping] Transcobalamin-2
Show all
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005576 [extracellular region]
GO:0006824 [cobalt ion transport]
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
Show all
423 aa
47.1 kDa
Yes 0
TCN2-203
ENSP00000384914
ENST00000407817
P20062
[Direct mapping] Transcobalamin-2
Show all
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Disease related genes
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006824 [cobalt ion transport]
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
GO:0043202 [lysosomal lumen]
GO:0046872 [metal ion binding]
Show all
400 aa
44.4 kDa
Yes 0
TCN2-205
ENSP00000394184
ENST00000450638
F8WE86
[Direct mapping] Transcobalamin-2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005576 [extracellular region]
GO:0006824 [cobalt ion transport]
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
Show all
402 aa
44.8 kDa
No 0
TCN2-208
ENSP00000513635
ENST00000698263
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
Show all
371 aa
41.2 kDa
Yes 0
TCN2-210
ENSP00000513636
ENST00000698265
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
Show all
422 aa
47.1 kDa
Yes 0
TCN2-211
ENSP00000513637
ENST00000698266
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
Show all
431 aa
47.7 kDa
Yes 0
TCN2-213
ENSP00000513639
ENST00000698268
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
Show all
436 aa
48.4 kDa
Yes 0
TCN2-215
ENSP00000513641
ENST00000698270
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
Show all
376 aa
41.7 kDa
Yes 0
TCN2-216
ENSP00000513642
ENST00000698271
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
Show all
437 aa
48.7 kDa
Yes 0
TCN2-217
ENSP00000513643
ENST00000698272
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
Show all
424 aa
47.2 kDa
Yes 0
TCN2-218
ENSP00000513644
ENST00000698273
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of ion transport and metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015889 [cobalamin transport]
GO:0031419 [cobalamin binding]
Show all
424 aa
47.2 kDa
Yes 0

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