MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.4 nTPM
HPA Brain:17.4 nTPM
GTEx:18.4 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:22.1 nTPM
Mouse:24.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
2666 Male, age 74, left hemisphere 16.8
1870 Female, age 42, unknown 14.9
2828 Female, age 72, unknown 14.7
2019 Male, age 18, unknown 13.8
2411 Female, age 72, unknown 13.8
1833 Male, age 53, unknown 13.3
1830 Male, age 51, unknown 12.8
2586 Male, age 75, left hemisphere 9.7
1827 Male, age 72, unknown 8.7
2219 Male, age 76, both hemispheres 7.0
Dorsal raphe nucleus
nTPM: 15.0
1828 Male, age 53, unknown 16.1
2750 Male, age 76, both hemispheres 15.5
2298 Female, age 72, unknown 15.3
2047 Male, age 72, unknown 14.6
2016 Female, age 72, unknown 13.7
Inferior colliculus
nTPM: 13.2
1890 Male, age 53, unknown 15.8
2097 Female, age 72, unknown 13.5
1848 Female, age 42, unknown 12.7
2849 Male, age 72, unknown 10.8
Median raphe nucleus
nTPM: 13.2
2220 Male, age 76, midline 13.2
Periaquaductal grey, anterior
nTPM: 16.6
2502 Female, age 75, unknown 19.6
1947 Male, age 18, unknown 18.1
1795 Male, age 51, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 11.3
1831 Male, age 72, unknown 14.4
2464 Female, age 72, unknown 12.0
2850 Male, age 76, both hemispheres 9.6
1840 Male, age 53, unknown 9.2
Periaquaductal grey, lateral
nTPM: 11.8
2053 Male, age 18, unknown 14.6
2140 Male, age 76, both hemispheres 10.4
2272 Male, age 74, both hemispheres 10.4
Pretectal area
nTPM: 11.2
1817 Female, age 42, unknown 15.6
2667 Female, age 75, unknown 13.1
2224 Female, age 72, unknown 11.6
2825 Male, age 18, unknown 11.5
2007 Male, age 72, unknown 11.4
1815 Male, age 53, unknown 11.3
1944 Female, age 72, unknown 10.9
1816 Male, age 51, unknown 10.8
2316 Male, age 76, right hemisphere 10.6
2273 Male, age 74, both hemispheres 9.0
2407 Male, age 75, both hemispheres 7.5
Red nucleus
nTPM: 17.4
1954 Female, age 42, unknown 22.1
1821 Female, age 72, unknown 22.0
1904 Male, age 53, unknown 20.1
2769 Male, age 72, unknown 19.6
2227 Male, age 72, unknown 18.4
1865 Male, age 51, unknown 18.2
2823 Male, age 76, right hemisphere 18.1
2588 Male, age 74, left hemisphere 16.6
2503 Female, age 72, unknown 15.8
2725 Female, age 75, unknown 13.5
2584 Male, age 75, left hemisphere 12.9
2785 Male, age 18, unknown 11.0
Substantia nigra
nTPM: 12.5
2665 Male, age 74, both hemispheres 22.8
1851 Male, age 51, unknown 14.1
1889 Female, age 72, unknown 13.5
1916 Female, age 42, unknown 13.3
2241 Male, age 72, unknown 11.8
2590 Female, age 75, unknown 11.1
2699 Male, age 18, unknown 11.0
2583 Male, age 75, right hemisphere 10.2
2409 Female, age 72, unknown 9.0
1941 Male, age 53, unknown 8.2
Superior colliculus
nTPM: 12.0
2587 Male, age 74, left hemisphere 14.6
1895 Male, age 76, right hemisphere 13.1
2087 Female, age 72, unknown 12.7
1995 Male, age 72, unknown 12.6
2261 Male, age 18, unknown 12.3
1796 Male, age 53, unknown 12.2
1839 Male, age 51, unknown 12.0
1913 Female, age 42, unknown 11.6
2668 Female, age 75, unknown 11.4
2664 Male, age 75, both hemispheres 7.8
Ventral tegmental area
nTPM: 14.6
2223 Female, age 72, unknown 15.7
1942 Male, age 51, unknown 15.2
2218 Male, age 76, both hemispheres 14.6
2021 Male, age 53, unknown 14.4
2410 Female, age 72, unknown 14.1
1915 Female, age 42, unknown 13.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.4
Samples: 139

Max nTPM: 76.5
Min nTPM: 4.3
Std nTPM: 10.1
Median nTPM: 16.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 76.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 66.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 54.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 48.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 45.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 35.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 33.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 32.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 32.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 31.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 29.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.2
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.8
Sample A Female 17.6
Sample B Female 20.1
Sample C Male 15.8
Sample D Male 19.4
Midbrain
nTPM: 17.3
Samples: 4

Max nTPM: 22.4
Min nTPM: 15.2
Sample A Female 22.4
Sample B Female 15.8
Sample C Male 15.9
Sample D Male 15.2
Periaqueductal gray
nTPM: 22.1
Samples: 3

Max nTPM: 23.3
Min nTPM: 20.0
Sample B Female 20.0
Sample C Male 23.1
Sample D Male 23.3
Superior colliculi
nTPM: 21.0
Samples: 4

Max nTPM: 25.0
Min nTPM: 18.4
Sample A Female 21.5
Sample B Female 25.0
Sample C Male 18.4
Sample D Male 19.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 26.0
Min nTPM: 23.1
Sample A Male 25.7
Sample B Male 23.1
Sample C Female 24.4
Sample D Female 26.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70565306 Antisense, RP_050623_04_F11, Mouse strain C57BL/6J (56 days, male) 0.2
71924389 Antisense, RP_050623_04_F11, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org