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SMYD3
HPA
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  • SMYD3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SMYD3
Synonyms KMT3E, ZMYND1, ZNFN3A1
Gene descriptioni

Full gene name according to HGNC.

SET and MYND domain containing 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q44
Chromosome location (bp) 245749342 - 246507312
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000185420 (version 109)
Entrez gene 64754
HGNC HGNC:15513
UniProt Q9H7B4 (UniProt - Evidence at protein level)
neXtProt NX_Q9H7B4
GeneCards SMYD3
Antibodypedia SMYD3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation 1, 2. Also methylates 'Lys-5' of histone H4 3. Plays an important role in transcriptional activation as a member of an RNA polymerase complex 4. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences 5.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Chromatin regulator, Methyltransferase, Transferase
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, S-adenosyl-L-methionine, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a histone methyltransferase which functions in RNA polymerase II complexes by an interaction with a specific RNA helicase. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SMYD3-203
ENSP00000375712
ENST00000391836
A8MXR1
[Direct mapping] Histone-lysine N-methyltransferase SMYD3
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
147 aa
17.1 kDa
No 0
SMYD3-204
ENSP00000385380
ENST00000403792
B0QZ88
[Direct mapping] Histone-lysine N-methyltransferase SMYD3
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0046872 [metal ion binding]
Show all
182 aa
20.8 kDa
No 0
SMYD3-205
ENSP00000408122
ENST00000453676
B0QZA0
[Direct mapping] Histone-lysine N-methyltransferase SMYD3
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0046872 [metal ion binding]
Show all
131 aa
15.2 kDa
No 0
SMYD3-206
ENSP00000394281
ENST00000455277
B0QZ99
[Direct mapping] Histone-lysine N-methyltransferase SMYD3
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0046872 [metal ion binding]
Show all
74 aa
8.6 kDa
No 0
SMYD3-214
ENSP00000419184
ENST00000490107
Q9H7B4
[Direct mapping] Histone-lysine N-methyltransferase SMYD3
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000993 [RNA polymerase II complex binding]
GO:0001162 [RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006325 [chromatin organization]
GO:0006334 [nucleosome assembly]
GO:0006469 [negative regulation of protein kinase activity]
GO:0008168 [methyltransferase activity]
GO:0014904 [myotube cell development]
GO:0016740 [transferase activity]
GO:0018024 [histone-lysine N-methyltransferase activity]
GO:0032259 [methylation]
GO:0033138 [positive regulation of peptidyl-serine phosphorylation]
GO:0034968 [histone lysine methylation]
GO:0042800 [histone methyltransferase activity (H3-K4 specific)]
GO:0045184 [establishment of protein localization]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0046872 [metal ion binding]
GO:0071549 [cellular response to dexamethasone stimulus]
Show all
428 aa
49.1 kDa
No 0
SMYD3-218
ENSP00000487434
ENST00000630181
Q9H7B4
[Direct mapping] Histone-lysine N-methyltransferase SMYD3
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006325 [chromatin organization]
GO:0008168 [methyltransferase activity]
GO:0016740 [transferase activity]
GO:0018024 [histone-lysine N-methyltransferase activity]
GO:0032259 [methylation]
GO:0034968 [histone lysine methylation]
GO:0042800 [histone methyltransferase activity (H3-K4 specific)]
GO:0046872 [metal ion binding]
Show all
369 aa
42.6 kDa
No 0

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