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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:269.9 nTPM
HPA Brain:425.1 nTPM
GTEx:269.9 nTPM
FANTOM5:694.2 Scaled Tags Per Million
Pig:424.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

425.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 371.4
2565 Male, age 75, midline 458.3
2194 Female, age 79, both hemispheres 445.5
1981 Female, age 72, midline 394.3
2816 Male, age 47, midline 317.5
2048 Male, age 55, midline 241.5
Cervical spinal cord, dorsal horn
nTPM: 425.1
2297 Male, age 75, both hemispheres 520.9
2069 Male, age 47, both hemispheres 461.9
2296 Male, age 66, both hemispheres 411.8
2721 Male, age 90, both hemispheres 409.5
2173 Female, age 72, unknown 377.6
1877 Male, age 55, unknown 368.8
Cervical spinal cord, ventral horn
nTPM: 383.4
2480 Male, age 75, both hemispheres 441.1
2068 Male, age 55, unknown 423.9
2820 Female, age 79, both hemispheres 398.0
2295 Male, age 66, both hemispheres 387.6
2809 Male, age 90, both hemispheres 349.8
2098 Female, age 72, unknown 300.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 269.9
Samples: 159

Max nTPM: 559.7
Min nTPM: 139.4
Std nTPM: 62.1
Median nTPM: 268.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 559.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 474.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 446.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 410.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 404.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 391.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 386.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 379.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 373.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 372.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 367.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 364.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 353.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 351.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 347.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 343.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 341.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 338.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 338.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 334.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 333.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 330.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 327.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 327.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 326.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 325.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 321.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 318.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 318.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 316.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 315.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 314.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 314.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 313.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 307.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 305.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 303.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 300.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 299.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 299.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 299.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 296.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 295.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 294.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 294.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 293.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 291.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 289.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 289.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 289.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 289.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 288.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 287.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 287.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 287.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 285.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 283.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 283.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 283.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 282.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 281.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 280.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 280.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 278.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 278.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 278.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 277.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 276.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 274.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 274.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 274.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 274.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 272.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 270.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 270.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 269.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 268.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 268.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 268.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 268.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 267.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 266.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 266.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 263.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 262.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 262.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 259.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 259.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 259.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 258.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 257.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 256.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 254.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 253.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 253.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 250.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 248.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 248.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 248.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 246.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 246.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 245.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 244.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 244.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 244.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 243.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 243.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 243.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 243.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 241.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 237.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 236.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 234.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 230.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 230.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 228.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 226.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 226.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 226.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 224.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 221.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 221.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 221.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 221.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 220.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 219.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 218.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 217.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 216.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 216.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 215.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 215.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 212.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 211.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 210.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 210.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 209.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 209.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 208.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 206.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 204.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 203.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 200.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 200.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 198.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 195.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 195.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 195.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 194.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 186.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 184.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 182.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 174.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 170.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 169.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 163.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 154.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 144.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 139.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

694.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 694.2
FF:10181-103D1 60 years, female 899.5
FF:10159-103A6 76 years, female 488.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

424.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 362.0
Samples: 4

Max nTPM: 420.4
Min nTPM: 298.1
Sample A Female 420.4
Sample B Female 298.1
Sample C Male 327.2
Sample D Male 402.4
Ventral spinal cord
nTPM: 424.8
Samples: 4

Max nTPM: 486.5
Min nTPM: 357.1
Sample A Female 440.0
Sample B Female 415.5
Sample C Male 486.5
Sample D Male 357.1

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