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POMK
HPA
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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

POMK
Synonyms FLJ23356, SgK196
Gene descriptioni

Full gene name according to HGNC.

Protein O-mannose kinase
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 8
Cytoband p11.21
Chromosome location (bp) 43093498 - 43131180
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000185900 (version 109)
Entrez gene 84197
HGNC HGNC:26267
UniProt Q9H5K3 (UniProt - Evidence at protein level)
neXtProt NX_Q9H5K3
GeneCards POMK
Antibodypedia POMK antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Protein O-mannose kinase that specifically mediates phosphorylation at the 6-position of an O-mannose of the trisaccharide (N-acetylgalactosamine (GalNAc)-beta-1,3-N-acetylglucosamine (GlcNAc)- beta-1,4-mannose) to generate phosphorylated O-mannosyl trisaccharide (N-acetylgalactosamine-beta-1,3-N-acetylglucosamine-beta-1,4-(phosphate-6-)mannose). Phosphorylated O-mannosyl trisaccharide is a carbohydrate structure present in alpha-dystroglycan (DAG1), which is required for binding laminin G-like domain-containing extracellular proteins with high affinity. Only shows kinase activity when the GalNAc-beta-3-GlcNAc-beta-terminus is linked to the 4-position of O-mannose, suggesting that this disaccharide serves as the substrate recognition motif.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Kinase, Transferase
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a protein that may be involved in the presentation of the laminin-binding O-linked carbohydrate chain of alpha-dystroglycan (a-DG), which forms transmembrane linkages between the extracellular matrix and the exoskeleton. Some pathogens use this O-linked carbohydrate unit for host entry. Loss of function compound heterozygous mutations in this gene were found in a human patient affected by the Walker-Warburg syndrome (WWS) phenotype. Mice lacking this gene contain misplaced neurons (heterotopia) in some regions of the brain, possibly from defects in neuronal migration. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, May 2013]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
POMK-201
ENSP00000331258
ENST00000331373
Q9H5K3
[Direct mapping] Protein O-mannose kinase
Show all
Enzymes
   ENZYME proteins
   Transferases
   Kinases
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0004672 [protein kinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006468 [protein phosphorylation]
GO:0006493 [protein O-linked glycosylation]
GO:0007420 [brain development]
GO:0007611 [learning or memory]
GO:0016020 [membrane]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016740 [transferase activity]
GO:0016773 [phosphotransferase activity, alcohol group as acceptor]
GO:0019200 [carbohydrate kinase activity]
GO:0019233 [sensory perception of pain]
GO:0046835 [carbohydrate phosphorylation]
GO:0050905 [neuromuscular process]
Show all
350 aa
40 kDa
No 1
POMK-202
ENSP00000429090
ENST00000518991
E5RJD5
[Direct mapping] Protein O-mannose kinase
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0006493 [protein O-linked glycosylation]
GO:0016020 [membrane]
GO:0019200 [carbohydrate kinase activity]
GO:0046835 [carbohydrate phosphorylation]
Show all
94 aa
10.7 kDa
No 1
POMK-205
ENSP00000502544
ENST00000674676
A0A6Q8PFG8
[Direct mapping] Protein O-mannose kinase
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004672 [protein kinase activity]
GO:0005524 [ATP binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006468 [protein phosphorylation]
GO:0006493 [protein O-linked glycosylation]
GO:0016020 [membrane]
GO:0019200 [carbohydrate kinase activity]
GO:0046835 [carbohydrate phosphorylation]
Show all
256 aa
29.3 kDa
No 0
POMK-208
ENSP00000502636
ENST00000674820
E5RJD5
[Direct mapping] Protein O-mannose kinase
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0006493 [protein O-linked glycosylation]
GO:0016020 [membrane]
GO:0019200 [carbohydrate kinase activity]
GO:0046835 [carbohydrate phosphorylation]
Show all
94 aa
10.7 kDa
No 1
POMK-209
ENSP00000501823
ENST00000674937
A0A6Q8PFH3
[Direct mapping] Protein O-mannose kinase
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004672 [protein kinase activity]
GO:0006468 [protein phosphorylation]
GO:0006493 [protein O-linked glycosylation]
GO:0016020 [membrane]
GO:0019200 [carbohydrate kinase activity]
GO:0046835 [carbohydrate phosphorylation]
Show all
336 aa
38.5 kDa
No 1
POMK-211
ENSP00000501906
ENST00000675129
E5RJD5
[Direct mapping] Protein O-mannose kinase
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0006493 [protein O-linked glycosylation]
GO:0016020 [membrane]
GO:0019200 [carbohydrate kinase activity]
GO:0046835 [carbohydrate phosphorylation]
Show all
94 aa
10.7 kDa
No 1
POMK-215
ENSP00000501793
ENST00000675675
A0A6Q8PFG8
[Direct mapping] Protein O-mannose kinase
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004672 [protein kinase activity]
GO:0005524 [ATP binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006468 [protein phosphorylation]
GO:0006493 [protein O-linked glycosylation]
GO:0016020 [membrane]
GO:0019200 [carbohydrate kinase activity]
GO:0046835 [carbohydrate phosphorylation]
Show all
256 aa
29.3 kDa
No 0
POMK-219
ENSP00000502774
ENST00000676193
Q9H5K3
[Direct mapping] Protein O-mannose kinase
Show all
Enzymes
   ENZYME proteins
   Transferases
   Kinases
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0004672 [protein kinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006468 [protein phosphorylation]
GO:0006493 [protein O-linked glycosylation]
GO:0007420 [brain development]
GO:0016020 [membrane]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016740 [transferase activity]
GO:0016773 [phosphotransferase activity, alcohol group as acceptor]
GO:0019200 [carbohydrate kinase activity]
GO:0046835 [carbohydrate phosphorylation]
Show all
350 aa
40 kDa
No 1

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