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SETD4
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • STRUCT & INT

  • SETD4
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SETD4
Synonyms C21orf18, C21orf27
Gene descriptioni

Full gene name according to HGNC.

SET domain containing 4
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 21
Cytoband q22.12
Chromosome location (bp) 36034541 - 36079389
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

12
Ensembl ENSG00000185917 (version 109)
Entrez gene 54093
HGNC HGNC:1258
UniProt Q9NVD3 (UniProt - Evidence at protein level)
neXtProt NX_Q9NVD3
GeneCards SETD4
Antibodypedia SETD4 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Histone-lysine N-methyltransferase that acts as a regulator of cell proliferation, cell differentiation and inflammatory response 1. Regulates the inflammatory response by mediating mono- and dimethylation of 'Lys-4' of histone H3 (H3K4me1 and H3K4me2, respectively), leading to activate the transcription of pro-inflammatory cytokines IL6 and TNF-alpha (By similarity). Also involved in the regulation of stem cell quiescence by catalyzing the trimethylation of 'Lys-20' of histone H4 (H4K20me3), thereby promoting heterochromatin formation 2. Involved in proliferation, migration, paracrine and myogenic differentiation of bone marrow mesenchymal stem cells (BMSCs) (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Methyltransferase, Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Inflammatory response
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

S-adenosyl-L-methionine
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables histone methyltransferase activity (H4-K20 specific). Involved in histone H4-K20 trimethylation. Located in cytosol and nucleus. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SETD4-201
ENSP00000329189
ENST00000332131
Q9NVD3
[Direct mapping] SET domain-containing protein 4
Show all
Enzymes
   ENZYME proteins
   Transferases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006954 [inflammatory response]
GO:0008168 [methyltransferase activity]
GO:0016279 [protein-lysine N-methyltransferase activity]
GO:0016740 [transferase activity]
GO:0018023 [peptidyl-lysine trimethylation]
GO:0018026 [peptidyl-lysine monomethylation]
GO:0032259 [methylation]
GO:0032755 [positive regulation of interleukin-6 production]
GO:0032760 [positive regulation of tumor necrosis factor production]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0042800 [histone methyltransferase activity (H3-K4 specific)]
GO:0044648 [histone H3-K4 dimethylation]
GO:0050729 [positive regulation of inflammatory response]
GO:0071863 [regulation of cell proliferation in bone marrow]
GO:0097692 [histone H3-K4 monomethylation]
GO:0140941 []
GO:0140944 []
GO:0140945 []
Show all
440 aa
50.4 kDa
No 0
SETD4-202
ENSP00000382152
ENST00000399201
A8MTS1
[Direct mapping] SET domain-containing protein 4
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0005515 [protein binding]
GO:0016279 [protein-lysine N-methyltransferase activity]
GO:0018023 [peptidyl-lysine trimethylation]
Show all
283 aa
32.4 kDa
No 0
SETD4-203
ENSP00000382156
ENST00000399205
A8MTS1
[Direct mapping] SET domain-containing protein 4
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0005515 [protein binding]
GO:0016279 [protein-lysine N-methyltransferase activity]
GO:0018023 [peptidyl-lysine trimethylation]
Show all
283 aa
32.4 kDa
No 0
SETD4-204
ENSP00000382158
ENST00000399207
Q9NVD3
[Direct mapping] SET domain-containing protein 4
Show all
Enzymes
   ENZYME proteins
   Transferases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006954 [inflammatory response]
GO:0008168 [methyltransferase activity]
GO:0016279 [protein-lysine N-methyltransferase activity]
GO:0016740 [transferase activity]
GO:0018023 [peptidyl-lysine trimethylation]
GO:0018026 [peptidyl-lysine monomethylation]
GO:0032259 [methylation]
GO:0032755 [positive regulation of interleukin-6 production]
GO:0032760 [positive regulation of tumor necrosis factor production]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0042800 [histone methyltransferase activity (H3-K4 specific)]
GO:0044648 [histone H3-K4 dimethylation]
GO:0050729 [positive regulation of inflammatory response]
GO:0071863 [regulation of cell proliferation in bone marrow]
GO:0097692 [histone H3-K4 monomethylation]
GO:0140941 []
GO:0140944 []
GO:0140945 []
Show all
307 aa
35.1 kDa
No 0
SETD4-205
ENSP00000382159
ENST00000399208
Q9NVD3
[Direct mapping] SET domain-containing protein 4
Show all
Enzymes
   ENZYME proteins
   Transferases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006954 [inflammatory response]
GO:0008168 [methyltransferase activity]
GO:0016279 [protein-lysine N-methyltransferase activity]
GO:0016740 [transferase activity]
GO:0018023 [peptidyl-lysine trimethylation]
GO:0018026 [peptidyl-lysine monomethylation]
GO:0032259 [methylation]
GO:0032755 [positive regulation of interleukin-6 production]
GO:0032760 [positive regulation of tumor necrosis factor production]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0042800 [histone methyltransferase activity (H3-K4 specific)]
GO:0044648 [histone H3-K4 dimethylation]
GO:0050729 [positive regulation of inflammatory response]
GO:0071863 [regulation of cell proliferation in bone marrow]
GO:0097692 [histone H3-K4 monomethylation]
GO:0140941 []
GO:0140944 []
GO:0140945 []
Show all
307 aa
35.1 kDa
No 0
SETD4-206
ENSP00000382161
ENST00000399212
Q9NVD3
[Direct mapping] SET domain-containing protein 4
Show all
Enzymes
   ENZYME proteins
   Transferases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006954 [inflammatory response]
GO:0008168 [methyltransferase activity]
GO:0016279 [protein-lysine N-methyltransferase activity]
GO:0016740 [transferase activity]
GO:0018023 [peptidyl-lysine trimethylation]
GO:0018026 [peptidyl-lysine monomethylation]
GO:0032259 [methylation]
GO:0032755 [positive regulation of interleukin-6 production]
GO:0032760 [positive regulation of tumor necrosis factor production]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0042800 [histone methyltransferase activity (H3-K4 specific)]
GO:0044648 [histone H3-K4 dimethylation]
GO:0050729 [positive regulation of inflammatory response]
GO:0071863 [regulation of cell proliferation in bone marrow]
GO:0097692 [histone H3-K4 monomethylation]
GO:0140941 []
GO:0140944 []
GO:0140945 []
Show all
416 aa
47.7 kDa
No 0
SETD4-207
ENSP00000382163
ENST00000399215
Q9NVD3
[Direct mapping] SET domain-containing protein 4
Show all
Enzymes
   ENZYME proteins
   Transferases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006954 [inflammatory response]
GO:0008168 [methyltransferase activity]
GO:0016279 [protein-lysine N-methyltransferase activity]
GO:0016740 [transferase activity]
GO:0018023 [peptidyl-lysine trimethylation]
GO:0018026 [peptidyl-lysine monomethylation]
GO:0032259 [methylation]
GO:0032755 [positive regulation of interleukin-6 production]
GO:0032760 [positive regulation of tumor necrosis factor production]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0042800 [histone methyltransferase activity (H3-K4 specific)]
GO:0044648 [histone H3-K4 dimethylation]
GO:0050729 [positive regulation of inflammatory response]
GO:0071863 [regulation of cell proliferation in bone marrow]
GO:0097692 [histone H3-K4 monomethylation]
GO:0140941 []
GO:0140944 []
GO:0140945 []
Show all
440 aa
50.4 kDa
No 0
SETD4-208
ENSP00000399998
ENST00000424303
C9JWV5
[Direct mapping] SET domain-containing protein 4
Show all
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0016279 [protein-lysine N-methyltransferase activity]
GO:0018023 [peptidyl-lysine trimethylation]
Show all
231 aa
26.1 kDa
No 0
SETD4-209
ENSP00000396837
ENST00000429161
C9JIU9
[Direct mapping] SET domain-containing protein 4
Show all
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0016279 [protein-lysine N-methyltransferase activity]
GO:0018023 [peptidyl-lysine trimethylation]
Show all
225 aa
25.5 kDa
No 0
SETD4-210
ENSP00000394822
ENST00000442559
C9JPA1
[Direct mapping] SET domain-containing protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
70 aa
7.9 kDa
No 0
SETD4-211
ENSP00000392463
ENST00000443703
C9J256
[Direct mapping] SET domain-containing protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
67 aa
7.6 kDa
No 0
SETD4-212
ENSP00000413318
ENST00000446166
C9JYV0
[Direct mapping] SET domain-containing protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
124 aa
14 kDa
No 0

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