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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
41.3
nTPM
GTEx:
41.3
nTPM
FANTOM5:
77.9
Scaled Tags Per Million
Pig:
141.8
nTPM
Mouse:
468.2
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA035200
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Low
Inner nuclear layer
Not detected
Inner plexiform layer
Low
Ganglion cells
Not detected
Nerve fiber layer
Low
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA059376
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.3
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 41.3
Samples: 105
Max nTPM: 93.4
Min nTPM: 8.1
Std nTPM: 18.6
Median nTPM:
218_1
71 years, female
93.4
352_1
62 years, male
85.2
318_1
68 years, male
80.9
353_1
82 years, female
80.3
320_1
89 years, female
78.2
319_1
81 years, male
77.7
316_1
62 years, male
73.4
350_1
84 years, female
73.1
286_1
68 years, female
70.8
172_1
72 years, female
69.3
354_1
81 years, female
68.7
163_1
78 years, male
65.4
335_1
73 years, female
65.3
322_1
76 years, male
65.2
356_1
87 years, female
62.1
386_1
76 years, male
61.1
376_1
75 years, female
59.9
425_1
59 years, female
59.6
6_1
73 years, female
57.9
349_1
83 years, male
57.9
503_1
68 years, male
57.1
292_1
71 years, male
56.7
447_1
81 years, male
56.0
237_1
82 years, male
55.8
321_1
62 years, female
54.8
406_1
79 years, male
54.5
355_1
70 years, female
54.3
480_1
63 years, male
53.8
177_1
74 years, male
53.4
405_1
91 years, male
52.3
394_1
75 years, female
52.0
517_1
88 years, male
51.2
396_1
62 years, male
49.5
251_1
78 years, male
47.6
377_1
82 years, female
46.9
348_1
84 years, male
46.7
243_1
75 years, male
45.9
229_1
69 years, female
45.7
99_1
64 years, male
45.5
389_1
86 years, female
44.8
379_1
60 years, male
44.2
506_1
65 years, male
44.0
293_1
68 years, female
43.9
351_1
91 years, male
43.8
324_1
76 years, male
43.7
468_1
89 years, male
43.6
404_1
82 years, female
43.1
311_1
78 years, male
42.9
291_1
76 years, male
42.1
189_1
76 years, male
41.5
518_1
75 years, female
40.9
375_1
74 years, female
40.8
526_1
61 years, male
39.9
264_1
73 years, female
39.5
115_1
83 years, male
38.7
499_1
55 years, female
38.3
317_1
60 years, male
37.9
153_1
70 years, female
37.0
246_1
77 years, male
36.4
145_1
84 years, male
36.1
295_1
61 years, female
33.4
347_1
72 years, male
33.4
266_1
85 years, male
33.3
173_1
67 years, male
33.2
9_1
66 years, female
32.9
384_1
83 years, male
32.9
35_1
74 years, female
32.5
265_1
87 years, male
31.2
137_1
83 years, male
30.5
254_1
77 years, female
30.4
452_1
88 years, female
30.4
217_1
76 years, male
30.3
288_1
66 years, female
30.0
43_1
64 years, female
29.7
117_1
61 years, male
28.6
142_1
61 years, female
28.6
139_1
64 years, female
27.9
81_1
67 years, male
27.4
17_1
71 years, male
27.2
120_1
70 years, female
27.0
18_1
88 years, male
25.8
109_1
81 years, female
25.6
126_1
63 years, male
25.6
466_1
57 years, female
24.3
162_1
79 years, female
24.1
32_1
67 years, male
23.9
4_1
88 years, female
22.8
495_1
57 years, female
22.8
314_1
67 years, male
22.4
307_1
66 years, female
21.0
313_1
79 years, female
20.7
415_1
77 years, female
20.7
315_1
62 years, female
19.4
414_1
84 years, female
18.8
149_1
88 years, male
18.6
501_1
88 years, male
17.5
119_1
70 years, female
17.4
42_1
85 years, male
16.6
2_1
77 years, female
15.5
308_1
70 years, female
13.3
41_1
94 years, female
13.1
413_1
59 years, female
12.4
490_1
67 years, female
12.2
89_1
63 years, male
11.6
491_1
89 years, female
8.1
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
