MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:33.3 nTPM
GTEx:9.6 nTPM
FANTOM5:59.6 Scaled Tags Per Million
Pig:42.6 nTPM
Mouse:20.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.2
1833 Male, age 53, unknown 37.3
2219 Male, age 76, both hemispheres 36.4
1830 Male, age 51, unknown 35.8
2411 Female, age 72, unknown 34.3
2019 Male, age 18, unknown 32.2
1870 Female, age 42, unknown 31.9
2828 Female, age 72, unknown 31.8
1827 Male, age 72, unknown 29.3
2666 Male, age 74, left hemisphere 28.5
2586 Male, age 75, left hemisphere 24.6
Dorsal raphe nucleus
nTPM: 28.8
2750 Male, age 76, both hemispheres 35.0
2016 Female, age 72, unknown 31.0
2047 Male, age 72, unknown 28.9
1828 Male, age 53, unknown 26.9
2298 Female, age 72, unknown 22.2
Inferior colliculus
nTPM: 29.1
2849 Male, age 72, unknown 32.7
1848 Female, age 42, unknown 29.8
1890 Male, age 53, unknown 29.2
2097 Female, age 72, unknown 24.8
Median raphe nucleus
nTPM: 27.8
2220 Male, age 76, midline 27.8
Periaquaductal grey, anterior
nTPM: 26.3
2502 Female, age 75, unknown 28.8
1795 Male, age 51, unknown 25.0
1947 Male, age 18, unknown 25.0
Periaquaductal grey, dorsal
nTPM: 30.9
2850 Male, age 76, both hemispheres 33.8
2464 Female, age 72, unknown 30.4
1840 Male, age 53, unknown 29.9
1831 Male, age 72, unknown 29.5
Periaquaductal grey, lateral
nTPM: 29.7
2140 Male, age 76, both hemispheres 30.5
2053 Male, age 18, unknown 29.9
2272 Male, age 74, both hemispheres 28.8
Pretectal area
nTPM: 29.0
2316 Male, age 76, right hemisphere 32.6
1815 Male, age 53, unknown 31.6
1817 Female, age 42, unknown 31.2
2825 Male, age 18, unknown 30.9
2407 Male, age 75, both hemispheres 30.1
2667 Female, age 75, unknown 29.8
2224 Female, age 72, unknown 29.3
2273 Male, age 74, both hemispheres 27.5
2007 Male, age 72, unknown 26.5
1816 Male, age 51, unknown 25.1
1944 Female, age 72, unknown 24.9
Red nucleus
nTPM: 33.3
2823 Male, age 76, right hemisphere 39.1
2503 Female, age 72, unknown 38.2
1904 Male, age 53, unknown 37.1
1865 Male, age 51, unknown 35.3
1821 Female, age 72, unknown 32.7
2227 Male, age 72, unknown 32.1
2588 Male, age 74, left hemisphere 31.9
2769 Male, age 72, unknown 31.6
2725 Female, age 75, unknown 31.0
2785 Male, age 18, unknown 30.9
1954 Female, age 42, unknown 29.9
2584 Male, age 75, left hemisphere 29.7
Substantia nigra
nTPM: 30.3
2699 Male, age 18, unknown 36.1
2409 Female, age 72, unknown 35.7
2583 Male, age 75, right hemisphere 31.3
2241 Male, age 72, unknown 31.0
2665 Male, age 74, both hemispheres 29.8
1889 Female, age 72, unknown 28.7
1851 Male, age 51, unknown 28.5
2590 Female, age 75, unknown 28.4
1941 Male, age 53, unknown 27.6
1916 Female, age 42, unknown 25.8
Superior colliculus
nTPM: 30.1
1895 Male, age 76, right hemisphere 35.8
1913 Female, age 42, unknown 35.3
1995 Male, age 72, unknown 34.3
2587 Male, age 74, left hemisphere 31.2
1839 Male, age 51, unknown 30.7
2668 Female, age 75, unknown 29.9
2087 Female, age 72, unknown 27.8
2261 Male, age 18, unknown 25.8
1796 Male, age 53, unknown 25.7
2664 Male, age 75, both hemispheres 24.0
Ventral tegmental area
nTPM: 30.2
2223 Female, age 72, unknown 31.7
2410 Female, age 72, unknown 31.5
1942 Male, age 51, unknown 31.2
2218 Male, age 76, both hemispheres 29.8
2021 Male, age 53, unknown 29.1
1915 Female, age 42, unknown 27.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.6
Samples: 139

Max nTPM: 18.6
Min nTPM: 4.5
Std nTPM: 2.6
Median nTPM: 9.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 18.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 16.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 16.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 15.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 15.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 15.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 14.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 14.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 13.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 59.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.6
FF:10158-103A5 76 years, female 59.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 42.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.8
Samples: 4

Max nTPM: 50.9
Min nTPM: 30.2
Sample A Female 30.2
Sample B Female 41.2
Sample C Male 36.9
Sample D Male 50.9
Midbrain
nTPM: 37.4
Samples: 4

Max nTPM: 41.2
Min nTPM: 33.5
Sample A Female 39.8
Sample B Female 41.2
Sample C Male 33.5
Sample D Male 34.9
Periaqueductal gray
nTPM: 42.6
Samples: 3

Max nTPM: 44.4
Min nTPM: 39.5
Sample B Female 44.0
Sample C Male 39.5
Sample D Male 44.4
Superior colliculi
nTPM: 32.1
Samples: 4

Max nTPM: 35.3
Min nTPM: 27.5
Sample A Female 27.5
Sample B Female 32.0
Sample C Male 33.5
Sample D Male 35.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 20.9
Min nTPM: 18.5
Sample A Male 18.5
Sample B Male 20.9
Sample C Female 20.8
Sample D Female 20.3

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