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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:108.3 nTPM
GTEx:108.3 nTPM
FANTOM5:246.4 Scaled Tags Per Million

VAGINA - Annotated protein expression
Pending normal tissue analysis

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA039337
Squamous epithelial cells Medium

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 108.3
Samples: 156

Max nTPM: 299.2
Min nTPM: 44.5
Std nTPM: 43.8
Median nTPM: 103.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 299.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 240.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 230.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 225.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 225.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 220.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 197.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 194.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 188.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 187.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 181.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 180.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 177.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 173.6
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 169.3
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 165.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 162.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 157.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 153.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 151.8
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 147.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 147.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 146.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 145.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 143.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 143.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 140.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 137.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 137.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 135.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 134.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 134.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 133.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 133.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 133.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 132.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 132.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 131.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 125.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 125.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 125.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 125.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 124.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 124.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 123.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 122.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 122.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 122.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 122.4
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 121.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 121.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 121.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 121.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 120.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 119.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 119.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 118.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 118.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 118.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 115.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 115.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 115.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 113.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 113.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 113.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 113.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 112.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 111.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 111.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 109.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 109.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 109.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 108.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 108.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 107.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 106.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 104.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 104.4
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 102.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 101.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 99.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 99.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 99.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 97.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 96.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 93.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 92.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 91.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 90.9
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 90.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 90.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 90.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 90.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 89.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 89.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 89.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 89.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 88.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 87.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 87.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 87.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 87.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 86.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 86.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 85.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 85.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 85.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 82.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 82.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 82.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 81.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 80.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 80.2
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 79.4
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 79.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 79.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 79.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 78.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 76.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 76.3
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 75.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 75.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 75.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 75.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 72.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 69.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 69.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 67.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 65.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 64.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 64.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 63.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 63.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 62.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 61.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 61.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 60.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 58.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 57.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 57.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 56.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 56.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 55.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 54.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 54.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 54.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 53.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 53.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 53.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 52.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 51.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 50.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 49.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 48.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 47.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 44.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

246.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 246.4
FF:10204-103F6 68 years, female 246.4

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