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BACE1
HPA
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  • BACE1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

BACE1
Synonyms BACE
Gene descriptioni

Full gene name according to HGNC.

Beta-secretase 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband q23.3
Chromosome location (bp) 117285232 - 117316259
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000186318 (version 109)
Entrez gene 23621
HGNC HGNC:933
UniProt P56817 (UniProt - Evidence at protein level)
neXtProt NX_P56817
GeneCards BACE1
Antibodypedia BACE1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase 1, 2, 3. Cleaves CHL1 (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Aspartyl protease, Hydrolase, Protease
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the peptidase A1 family of aspartic proteases. Alternative splicing results in multiple transcript variants, at least one of which encodes a preproprotein that is proteolytically processed to generate the mature protease. This transmembrane protease catalyzes the first step in the formation of amyloid beta peptide from amyloid precursor protein. Amyloid beta peptides are the main constituent of amyloid beta plaques, which accumulate in the brains of human Alzheimer's disease patients. [provided by RefSeq, Nov 2015]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
BACE1-201
ENSP00000318585
ENST00000313005
P56817
[Direct mapping] Beta-secretase 1
Show all
A0A024R3D7
[Target identity:100%; Query identity:100%] Beta-secretase 1
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Aspartic-type peptidases
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001540 [amyloid-beta binding]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005770 [late endosome]
GO:0005771 [multivesicular body]
GO:0005783 [endoplasmic reticulum]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0005886 [plasma membrane]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0008021 [synaptic vesicle]
GO:0008233 [peptidase activity]
GO:0008798 [beta-aspartyl-peptidase activity]
GO:0009314 [response to radiation]
GO:0009986 [cell surface]
GO:0010008 [endosome membrane]
GO:0010288 [response to lead ion]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0019899 [enzyme binding]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0034205 [amyloid-beta formation]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0042995 [cell projection]
GO:0043025 [neuronal cell body]
GO:0043525 [positive regulation of neuron apoptotic process]
GO:0045121 [membrane raft]
GO:0050435 [amyloid-beta metabolic process]
GO:0050804 [modulation of chemical synaptic transmission]
GO:0050966 [detection of mechanical stimulus involved in sensory perception of pain]
GO:0055037 [recycling endosome]
GO:0060134 [prepulse inhibition]
GO:0070931 [Golgi-associated vesicle lumen]
GO:0071280 [cellular response to copper ion]
GO:0071287 [cellular response to manganese ion]
GO:0098686 [hippocampal mossy fiber to CA3 synapse]
GO:0098793 [presynapse]
GO:0099171 [presynaptic modulation of chemical synaptic transmission]
GO:0140448 [signaling receptor ligand precursor processing]
GO:1904646 [cellular response to amyloid-beta]
GO:1990000 [amyloid fibril formation]
Show all
501 aa
55.8 kDa
Yes 1
BACE1-202
ENSP00000475405
ENST00000392937
P56817
[Direct mapping] Beta-secretase 1
Show all
B7Z3Z4
[Target identity:100%; Query identity:100%] Beta-secretase 1
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Aspartic-type peptidases
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001540 [amyloid-beta binding]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005770 [late endosome]
GO:0005771 [multivesicular body]
GO:0005783 [endoplasmic reticulum]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0005886 [plasma membrane]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0008233 [peptidase activity]
GO:0008798 [beta-aspartyl-peptidase activity]
GO:0009986 [cell surface]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0019899 [enzyme binding]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0034205 [amyloid-beta formation]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0042995 [cell projection]
GO:0043525 [positive regulation of neuron apoptotic process]
GO:0045121 [membrane raft]
GO:0050435 [amyloid-beta metabolic process]
GO:0055037 [recycling endosome]
GO:0070931 [Golgi-associated vesicle lumen]
GO:1990000 [amyloid fibril formation]
Show all
401 aa
45 kDa
No 1
BACE1-203
ENSP00000402228
ENST00000428381
P56817
[Direct mapping] Beta-secretase 1
Show all
A0A024R3F9
[Target identity:100%; Query identity:100%] Beta-secretase 1
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Aspartic-type peptidases
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001540 [amyloid-beta binding]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005770 [late endosome]
GO:0005771 [multivesicular body]
GO:0005783 [endoplasmic reticulum]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0005886 [plasma membrane]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0008233 [peptidase activity]
GO:0008798 [beta-aspartyl-peptidase activity]
GO:0009986 [cell surface]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0019899 [enzyme binding]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0034205 [amyloid-beta formation]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0042995 [cell projection]
GO:0043525 [positive regulation of neuron apoptotic process]
GO:0045121 [membrane raft]
GO:0050435 [amyloid-beta metabolic process]
GO:0055037 [recycling endosome]
GO:0070931 [Golgi-associated vesicle lumen]
GO:1990000 [amyloid fibril formation]
Show all
432 aa
48.2 kDa
Yes 1
BACE1-204
ENSP00000403685
ENST00000445823
P56817
[Direct mapping] Beta-secretase 1
Show all
A0A024R3D5
[Target identity:100%; Query identity:100%] Beta-secretase 1
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Aspartic-type peptidases
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001540 [amyloid-beta binding]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005770 [late endosome]
GO:0005771 [multivesicular body]
GO:0005783 [endoplasmic reticulum]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0005886 [plasma membrane]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0008233 [peptidase activity]
GO:0008798 [beta-aspartyl-peptidase activity]
GO:0009986 [cell surface]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0019899 [enzyme binding]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0034205 [amyloid-beta formation]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0042995 [cell projection]
GO:0043525 [positive regulation of neuron apoptotic process]
GO:0045121 [membrane raft]
GO:0050435 [amyloid-beta metabolic process]
GO:0055037 [recycling endosome]
GO:0070931 [Golgi-associated vesicle lumen]
GO:1990000 [amyloid fibril formation]
Show all
457 aa
51.1 kDa
Yes 1
BACE1-206
ENSP00000422461
ENST00000510630
P56817
[Direct mapping] Beta-secretase 1
Show all
B7Z3K2
[Target identity:100%; Query identity:100%] Beta-secretase 1
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Aspartic-type peptidases
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001540 [amyloid-beta binding]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005770 [late endosome]
GO:0005771 [multivesicular body]
GO:0005783 [endoplasmic reticulum]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0005886 [plasma membrane]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0008233 [peptidase activity]
GO:0008798 [beta-aspartyl-peptidase activity]
GO:0009986 [cell surface]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0019899 [enzyme binding]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0034205 [amyloid-beta formation]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0042995 [cell projection]
GO:0043525 [positive regulation of neuron apoptotic process]
GO:0045121 [membrane raft]
GO:0050435 [amyloid-beta metabolic process]
GO:0055037 [recycling endosome]
GO:0070931 [Golgi-associated vesicle lumen]
GO:1990000 [amyloid fibril formation]
Show all
376 aa
42.2 kDa
No 1
BACE1-207
ENSP00000475171
ENST00000510915
U3KPS1
[Direct mapping] Beta-secretase 1
Show all
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005794 [Golgi apparatus]
GO:0006508 [proteolysis]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0045121 [membrane raft]
GO:0055037 [recycling endosome]
Show all
351 aa
38.9 kDa
No 0
BACE1-208
ENSP00000424536
ENST00000513780
P56817
[Direct mapping] Beta-secretase 1
Show all
A0A024R3E8
[Target identity:100%; Query identity:100%] Beta-secretase 1
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Aspartic-type peptidases
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001540 [amyloid-beta binding]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005770 [late endosome]
GO:0005771 [multivesicular body]
GO:0005783 [endoplasmic reticulum]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0005886 [plasma membrane]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0008233 [peptidase activity]
GO:0008798 [beta-aspartyl-peptidase activity]
GO:0009986 [cell surface]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0019899 [enzyme binding]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0034205 [amyloid-beta formation]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0042995 [cell projection]
GO:0043525 [positive regulation of neuron apoptotic process]
GO:0045121 [membrane raft]
GO:0050435 [amyloid-beta metabolic process]
GO:0055037 [recycling endosome]
GO:0070931 [Golgi-associated vesicle lumen]
GO:1990000 [amyloid fibril formation]
Show all
476 aa
52.9 kDa
Yes 1
BACE1-210
ENSP00000431848
ENST00000528053
E9PJG7
[Direct mapping] Beta-secretase 1
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005794 [Golgi apparatus]
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016787 [hydrolase activity]
GO:0045121 [membrane raft]
GO:0055037 [recycling endosome]
Show all
467 aa
52.1 kDa
Yes 1
BACE1-214
ENSP00000505419
ENST00000680681
A0A7P0T924
[Direct mapping] Beta-secretase 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005794 [Golgi apparatus]
GO:0006508 [proteolysis]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0045121 [membrane raft]
GO:0055037 [recycling endosome]
Show all
333 aa
37 kDa
No 0
BACE1-216
ENSP00000506107
ENST00000680971
A0A7P0TAB4
[Direct mapping] Beta-secretase 1
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005794 [Golgi apparatus]
GO:0006508 [proteolysis]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0045121 [membrane raft]
GO:0055037 [recycling endosome]
Show all
267 aa
30.4 kDa
No 1

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